Department of Molecular Biochemistry

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121 to 130 of 852 Results

E012b_2.fq.gz Aug 8, 2024 - NGS data related to Rajaram et al.: Allele specific DNA demethylation ... Gzip Archive - 190.9 MB - MD5: c3b7eea90519d9043f821ba38bd25494
E021_FKDL210213989-1a-D712-D712_H7CKVDRXY_L1_1.fq.gz Aug 8, 2024 - NGS data related to Rajaram et al.: Allele specific DNA demethylation ... Gzip Archive - 157.8 MB - MD5: 2e71707076732f4232f2fb6ceffb3664
E021_FKDL210213989-1a-D712-D712_H7CKVDRXY_L1_2.fq.gz Aug 8, 2024 - NGS data related to Rajaram et al.: Allele specific DNA demethylation ... Gzip Archive - 183.8 MB - MD5: 4a013fd1e93787ed4f73769ecc09666f
E022_FKDL210213989-1a-AK5007-AK5007_H7CKVDRXY_L1_1.fq.gz Aug 8, 2024 - NGS data related to Rajaram et al.: Allele specific DNA demethylation ... Gzip Archive - 148.6 MB - MD5: 24f41be9364b02e527b6cb1207dc5843
E022_FKDL210213989-1a-AK5007-AK5007_H7CKVDRXY_L1_2.fq.gz Aug 8, 2024 - NGS data related to Rajaram et al.: Allele specific DNA demethylation ... Gzip Archive - 172.0 MB - MD5: b16f30173e310742bf7a618c9652b0f8
Additional data related to Weirich et al.: Discovery of new NSD2 non-histone substrates and design of a super-substrate Mar 28, 2024 - MD Simulations Jeltsch, Albert; Schnee, Philipp; Pleiss, Jürgen; Weirich, Sara, 2024, "Additional data related to Weirich et al.: Discovery of new NSD2 non-histone substrates and design of a super-substrate", https://doi.org/10.18419/DARUS-3815, DaRUS, V1 This data collection contains additional data related to Weirich et al.: "Discovery of new NSD2 non-histone substrates and design of a super-substrate". This includes Modelled structures of NSD2 bound to different peptides Source data of the results of the MD analysis MD simulations codes and analysis scripts
Analysis-SN2-Transition_States.py Mar 28, 2024 - Additional data related to Weirich et al.: Discovery of new NSD2 non-histone substrates and design of a super-substrate Python Source Code - 3.3 KB - MD5: 7e56f5ea455fdaf01d765c2eedd0fd35 Python script to analyse the SN2 transition states in a MD trajectory.
contact_map_explorer.py Mar 28, 2024 - Additional data related to Weirich et al.: Discovery of new NSD2 non-histone substrates and design of a super-substrate Python Source Code - 9.6 KB - MD5: fd944dbf9f26ebc03682972be3b472b6 Python script to analyse the contacts in a MD trajectory
MD SourceData_P30G_P43S.xlsx Mar 28, 2024 - Additional data related to Weirich et al.: Discovery of new NSD2 non-histone substrates and design of a super-substrate MS Excel Spreadsheet - 105.8 KB - MD5: 9cbfc909c7a116f2f774327b9b857798 Source Data for the conducted MD simulation experiments with the P30G/P43S mutant
MD SourceData.xlsx Mar 28, 2024 - Additional data related to Weirich et al.: Discovery of new NSD2 non-histone substrates and design of a super-substrate MS Excel Spreadsheet - 195.0 KB - MD5: 4012b61efae90eac1b3485438cf56853 Source Data for the conducted MD simulation experiments

E012b_2.fq.gz

Aug 8, 2024 - NGS data related to Rajaram et al.: Allele specific DNA demethylation ...

Gzip Archive - 190.9 MB -

E021_FKDL210213989-1a-D712-D712_H7CKVDRXY_L1_1.fq.gz

Aug 8, 2024 - NGS data related to Rajaram et al.: Allele specific DNA demethylation ...

Gzip Archive - 157.8 MB -

E021_FKDL210213989-1a-D712-D712_H7CKVDRXY_L1_2.fq.gz

Aug 8, 2024 - NGS data related to Rajaram et al.: Allele specific DNA demethylation ...

Gzip Archive - 183.8 MB -

E022_FKDL210213989-1a-AK5007-AK5007_H7CKVDRXY_L1_1.fq.gz

Aug 8, 2024 - NGS data related to Rajaram et al.: Allele specific DNA demethylation ...

Gzip Archive - 148.6 MB -

E022_FKDL210213989-1a-AK5007-AK5007_H7CKVDRXY_L1_2.fq.gz

Aug 8, 2024 - NGS data related to Rajaram et al.: Allele specific DNA demethylation ...

Gzip Archive - 172.0 MB -

Additional data related to Weirich et al.: Discovery of new NSD2 non-histone substrates and design of a super-substrate

Mar 28, 2024 - MD Simulations

Jeltsch, Albert; Schnee, Philipp; Pleiss, Jürgen; Weirich, Sara, 2024, "Additional data related to Weirich et al.: Discovery of new NSD2 non-histone substrates and design of a super-substrate", https://doi.org/10.18419/DARUS-3815, DaRUS, V1

This data collection contains additional data related to Weirich et al.: "Discovery of new NSD2 non-histone substrates and design of a super-substrate". This includes Modelled structures of NSD2 bound to different peptides Source data of the results of the MD analysis MD simulations codes and analysis scripts

Analysis-SN2-Transition_States.py

Mar 28, 2024 - Additional data related to Weirich et al.: Discovery of new NSD2 non-histone substrates and design of a super-substrate

Python Source Code - 3.3 KB -

Python script to analyse the SN2 transition states in a MD trajectory.

contact_map_explorer.py

Mar 28, 2024 - Additional data related to Weirich et al.: Discovery of new NSD2 non-histone substrates and design of a super-substrate

Python Source Code - 9.6 KB -

Python script to analyse the contacts in a MD trajectory

MD SourceData_P30G_P43S.xlsx

Mar 28, 2024 - Additional data related to Weirich et al.: Discovery of new NSD2 non-histone substrates and design of a super-substrate

MS Excel Spreadsheet - 105.8 KB -

Source Data for the conducted MD simulation experiments with the P30G/P43S mutant