Institute of Biochemistry

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491 to 500 of 1,834 Results

PRDM9_H3K4_starting_structure.pdb Apr 28, 2025 - MD Simulations with PRDM9 application/vnd.palm - 220.3 KB - MD5: b542e94a21a3473c19d3f978f95402e7 PDB file for PRDM9 complexed with the 15 amino acid long H3K4 peptide
PRDM9_ZNB.pdb Apr 28, 2025 - MD Simulations with PRDM9 application/vnd.palm - 509 B - MD5: d380a5863e9f01b055de5d4695ef235a PDB file of Zink ion for structural stability
README.pdf Apr 28, 2025 - MD Simulations with PRDM9 Adobe PDF - 288.7 KB - MD5: 1590d95381b47eeef3ffddf9345b8783 README file to guide you through this repository and explain all contents.
SAM.xml Apr 28, 2025 - MD Simulations with PRDM9 XML - 20.9 KB - MD5: 8504b192cebc39de3edb5595d94cd0e4 Parameter file for cofactor SAM
ZNB.xml Apr 28, 2025 - MD Simulations with PRDM9 XML - 1.6 KB - MD5: a8f183de30b9a05bd6a6515d639ea88c Parameter file for zinc ions
NGS data related to Sogl et al. "Systematic analysis of specificities and flanking sequence preferences of bacterial DNA-(cytosine C5)-methyltransferases reveals mechanisms of enzyme- and sequence-specific DNA readout" Jan 13, 2025 - Amplicon based bisulfite NGS data Jeltsch, Albert; Bashtrykov, Pavel, 2025, "NGS data related to Sogl et al. "Systematic analysis of specificities and flanking sequence preferences of bacterial DNA-(cytosine C5)-methyltransferases reveals mechanisms of enzyme- and sequence-specific DNA readout"", https://doi.org/10.18419/DARUS-4515, DaRUS, V1, UNF:6:bSvQoJxvb+T/iyQGPOvTBA== [fileUNF] Analysis of flanking sequence preference with a randomized substrate and bioinformatic data For analysis of the flanking sequence preference, substrate with different target sites sites in a 9 or 10 bp randomized sequence context were prepared as described (Dukatz, et al. 2020; Dukatz, et al. 2022). Substrate methylation reactions were performed wi...
raw_data.zip Jan 13, 2025 - NGS data related to Sogl et al. "Systematic analysis of specificities and flanking sequence preferences of bacterial DNA-(cytosine C5)-methyltransferases reveals mechanisms of enzyme- and sequence-specific DNA readout" ZIP Archive - 177.1 MB - MD5: 6e0120fb5866aaffd82db1fbfa76b252
readme-1.pdf Jan 13, 2025 - NGS data related to Sogl et al. "Systematic analysis of specificities and flanking sequence preferences of bacterial DNA-(cytosine C5)-methyltransferases reveals mechanisms of enzyme- and sequence-specific DNA readout" Adobe PDF - 104.6 KB - MD5: 1fa8ecab0ba68b617138a98d90160ffc Description of the data structure
source_data.xlsx Jan 13, 2025 - NGS data related to Sogl et al. "Systematic analysis of specificities and flanking sequence preferences of bacterial DNA-(cytosine C5)-methyltransferases reveals mechanisms of enzyme- and sequence-specific DNA readout" MS Excel Spreadsheet - 736.2 KB - MD5: ddd9a622dbb5638621ca557e01fc4ec2
Supplementary_Table_S1.csv Jan 13, 2025 - NGS data related to Sogl et al. "Systematic analysis of specificities and flanking sequence preferences of bacterial DNA-(cytosine C5)-methyltransferases reveals mechanisms of enzyme- and sequence-specific DNA readout" Tabular Data - 53.3 KB - 8 Variables, 1106 Observations - UNF:6:bSvQoJxvb+T/iyQGPOvTBA== Assignment of experiments and data files and overview of the number of reads in CSV format

PRDM9_H3K4_starting_structure.pdb