Institute of Biochemistry

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481 to 490 of 1,834 Results

S7.tabular Jan 14, 2026 - Sequencing data related to Gutekunst et al. "Nucleosome linker DNA methylation by DNMT3A/DNMT3B3 is controlled by nucleosome binding and multimerization of DNMT3 complexes on DNA" Unknown - 18.9 MB - MD5: 26c34f1972a91d04a06ff9c82ee358e8
S8.tabular Jan 14, 2026 - Sequencing data related to Gutekunst et al. "Nucleosome linker DNA methylation by DNMT3A/DNMT3B3 is controlled by nucleosome binding and multimerization of DNMT3 complexes on DNA" Unknown - 11.9 MB - MD5: de8f0cd63192211344c6b4e000449f31
S9.tabular Jan 14, 2026 - Sequencing data related to Gutekunst et al. "Nucleosome linker DNA methylation by DNMT3A/DNMT3B3 is controlled by nucleosome binding and multimerization of DNMT3 complexes on DNA" Unknown - 14.0 MB - MD5: ae103bdda80363921b8aeee9cd5ae5c0
MD Simulations with PRDM9 May 22, 2025 - MD Simulations Jeltsch, Albert; Schnee, Philipp, 2025, "MD Simulations with PRDM9", https://doi.org/10.18419/DARUS-4567, DaRUS, V2 This data collection contains additional data related to Graf et al.: "Investigation and design of the dual specificity of the PRDM9 protein lysine methyltransferase". This includes: Modelled structures of PRDM9 bound to different peptides Source data of the results of the MD analysis MD simulations codes and analysis scripts
PRDM9_production_updated.py May 22, 2025 - MD Simulations with PRDM9 Python Source Code - 14.6 KB - MD5: 4e96dbf12d690fccfb42a03bb46b50ea Python script for the production of MD simulations of PRDM9 complexed with a peptide
PRDM9_AdoMet.pdb Apr 28, 2025 - MD Simulations with PRDM9 application/vnd.palm - 2.8 KB - MD5: 06725e1c633711c73ee4debdbd5d1498 PDB file of AdoMet cofactor
PRDM9_Analysis-SN2-Transition_States.py Apr 28, 2025 - MD Simulations with PRDM9 Python Source Code - 3.1 KB - MD5: 5372ebbaced32905de678aa61df0589f Python script to analyse the SN2 transition state-like conformations in a MD trajectory.
PRDM9_contact_maps_analysis.py Apr 28, 2025 - MD Simulations with PRDM9 Python Source Code - 4.5 KB - MD5: dc866effb0715ec46b6399e49ed330e7 Python script for the subsequent analysis of the contact maps analysin python script
PRDM9_contacts_single.py Apr 28, 2025 - MD Simulations with PRDM9 Python Source Code - 8.3 KB - MD5: c2f250b0579f0ce221c2fb029085539f Python script to analyse the contacts in a MD trajectory
PRDM9_H3K36_starting_structure.pdb Apr 28, 2025 - MD Simulations with PRDM9 application/vnd.palm - 220.6 KB - MD5: 62734a1811fb6c56b0a60c8138d055a3 PDB file for PRDM9 complexed with the 15 amino acid long H3K4 peptide

S7.tabular

Jan 14, 2026 - Sequencing data related to Gutekunst et al. "Nucleosome linker DNA methylation by DNMT3A/DNMT3B3 is controlled by nucleosome binding and multimerization of DNMT3 complexes on DNA"

Unknown - 18.9 MB -

S8.tabular

Jan 14, 2026 - Sequencing data related to Gutekunst et al. "Nucleosome linker DNA methylation by DNMT3A/DNMT3B3 is controlled by nucleosome binding and multimerization of DNMT3 complexes on DNA"

Unknown - 11.9 MB -

S9.tabular

Jan 14, 2026 - Sequencing data related to Gutekunst et al. "Nucleosome linker DNA methylation by DNMT3A/DNMT3B3 is controlled by nucleosome binding and multimerization of DNMT3 complexes on DNA"

Unknown - 14.0 MB -

MD Simulations with PRDM9

May 22, 2025 - MD Simulations

Jeltsch, Albert; Schnee, Philipp, 2025, "MD Simulations with PRDM9", https://doi.org/10.18419/DARUS-4567, DaRUS, V2

This data collection contains additional data related to Graf et al.: "Investigation and design of the dual specificity of the PRDM9 protein lysine methyltransferase". This includes: Modelled structures of PRDM9 bound to different peptides Source data of the results of the MD analysis MD simulations codes and analysis scripts

PRDM9_production_updated.py

May 22, 2025 - MD Simulations with PRDM9

Python Source Code - 14.6 KB -

Python script for the production of MD simulations of PRDM9 complexed with a peptide

PRDM9_AdoMet.pdb