Institute of Biochemistry

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1,341 to 1,350 of 1,351 Results

Query sequences for the update of the LccED Jan 27, 2020 - Bioinformatics Zeil, Catharina; Buchholz, Patrick C. F., 2020, "Query sequences for the update of the LccED", https://doi.org/10.18419/DARUS-559, DaRUS, V1, UNF:6:hIeqwMgxpY0QZZZ4FAMRvg== [fileUNF] Query sequences for the individual BLAST searches used to update the Laccase and Multicopper Oxidase Engineering Database (LccED, https://lcced.biocatnet.de/).
seeds_accession.tab Jan 27, 2020 - Query sequences for the update of the LccED Tabular Data - 25.8 KB - 1 Variables, 1260 Observations - UNF:6:hIeqwMgxpY0QZZZ4FAMRvg== Tabular file with headers: sequence identifier from the Laccase and Multicopper Oxidase Engineering Database (1st column) and NCBI accession.version (2nd column).
seeds.fasta Jan 27, 2020 - Query sequences for the update of the LccED Unknown - 711.0 KB - MD5: 183e995371de29d926c275458b38fdf6 Protein sequences are given in FASTA format with one line per sequence. Headers correspond to sequence identifiers of the Laccase and Multicopper Oxidase Engineering Database.
The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins Sep 30, 2019 - Bioinformatics Bauer, Tabea, 2019, "The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins", https://doi.org/10.18419/DARUS-458, DaRUS, V1, UNF:6:pbQRgDXU4w7vnxyqxzzuRQ== [fileUNF] To analyse the structural similarities of the N- and C-terminal domains, representative protein structures of each oxyanion hole type from the proteins of alpha/beta-hydrolase superfamilies 8 to 12 were selected from the Lipase Engineering Database (https://led.biocatnet.de/). The structures of the N- and C-terminal domains and the core domains wer...
APAP.tab Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins Tabular Data - 11.9 KB - 9 Variables, 173 Observations - UNF:6:UT/tuDCkMGlPeUykEk1hsw== APAP (acylaminoacyl peptidase from Aeropyrum pernix K1) spreadsheet of Supplements01-1.xlsx as csv
DPPIV.tab Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins Tabular Data - 7.0 KB - 9 Variables, 103 Observations - UNF:6:ZKUns1L0wMyZIEclSuHQVQ== DPPIV (human dipeptidyl peptidase IV) spreadsheet of Supplements01-1.xlsx as csv
HEP.tab Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins Tabular Data - 10.0 KB - 9 Variables, 154 Observations - UNF:6:bAQkev4V9Lkkkj8oTELKlg== HEP (human epoxide hydrolase) spreadsheet of Supplements01-1.xlsx as csv
HPL.tab Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins Tabular Data - 601 B - 9 Variables, 10 Observations - UNF:6:/rbtvGkBUcWV/wLnakHqRg== HPL (human pancreatic lipase) spreadsheet of Supplements01-1.xlsx as csv
PSML.tab Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins Tabular Data - 2.1 KB - 9 Variables, 35 Observations - UNF:6:XqW8mARoKShCASUYwLo1pA== PSML (Pseudomonas sp. MIS38 lipase) spreadsheet of Supplements01-1.xlsx as csv
RCE.tab Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins Tabular Data - 2.5 KB - 9 Variables, 41 Observations - UNF:6:bklMJ1HASVPCxiIVaP7wyQ== RCE (Rhodococcus sp. MB1 cocaine esterase) spreadsheet of Supplements01-1.xlsx as csv

Query sequences for the update of the LccED

Jan 27, 2020 - Bioinformatics

Zeil, Catharina; Buchholz, Patrick C. F., 2020, "Query sequences for the update of the LccED", https://doi.org/10.18419/DARUS-559, DaRUS, V1, UNF:6:hIeqwMgxpY0QZZZ4FAMRvg== [fileUNF]

Query sequences for the individual BLAST searches used to update the Laccase and Multicopper Oxidase Engineering Database (LccED, https://lcced.biocatnet.de/).

seeds_accession.tab

Jan 27, 2020 - Query sequences for the update of the LccED

Tabular Data - 25.8 KB - 1 Variables, 1260 Observations -

Tabular file with headers: sequence identifier from the Laccase and Multicopper Oxidase Engineering Database (1st column) and NCBI accession.version (2nd column).

seeds.fasta

Jan 27, 2020 - Query sequences for the update of the LccED

Unknown - 711.0 KB -

Protein sequences are given in FASTA format with one line per sequence. Headers correspond to sequence identifiers of the Laccase and Multicopper Oxidase Engineering Database.

The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins

Sep 30, 2019 - Bioinformatics

Bauer, Tabea, 2019, "The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins", https://doi.org/10.18419/DARUS-458, DaRUS, V1, UNF:6:pbQRgDXU4w7vnxyqxzzuRQ== [fileUNF]

To analyse the structural similarities of the N- and C-terminal domains, representative protein structures of each oxyanion hole type from the proteins of alpha/beta-hydrolase superfamilies 8 to 12 were selected from the Lipase Engineering Database (https://led.biocatnet.de/). The structures of the N- and C-terminal domains and the core domains wer...

APAP.tab

Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins

Tabular Data - 11.9 KB - 9 Variables, 173 Observations -

APAP (acylaminoacyl peptidase from Aeropyrum pernix K1) spreadsheet of Supplements01-1.xlsx as csv

DPPIV.tab

Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins

Tabular Data - 7.0 KB - 9 Variables, 103 Observations -

DPPIV (human dipeptidyl peptidase IV) spreadsheet of Supplements01-1.xlsx as csv

HEP.tab

Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins

Tabular Data - 10.0 KB - 9 Variables, 154 Observations -

HEP (human epoxide hydrolase) spreadsheet of Supplements01-1.xlsx as csv