1,281 to 1,290 of 1,362 Results
Apr 9, 2020 -
Conserved positions in expansin homologues
Tabular Data - 7.3 KB - 8 Variables, 85 Observations - UNF:6:CE90w0ai1+p+rVxLddj0OA==
Conserved positions in the C-terminal expansin domain with standard numbering according to PDB entry 4FER (Bacillus subtilis EXLX1, first column). The amino acids and their occurrence in % are given for different groups of sequences: (Bacteria (column 2), Fungi (column 3), EXPA (Expansin A, column 4), EXPB (Expansin B, column 5), EXLA (Expansin-lik... |
Apr 9, 2020 -
Conserved positions in expansin homologues
Tabular Data - 9.8 KB - 8 Variables, 123 Observations - UNF:6:ztPrC1aaxgvhz6A2pKE7oA==
Conserved positions in the N-terminal expansin domain with standard numbering according to PDB entry 4FER (Bacillus subtilis EXLX1, first column). The amino acids and their occurrence in % are given for different groups of sequences: (Bacteria (column 2), Fungi (column 3), EXPA (Expansin A, column 4), EXPB (Expansin B, column 5), EXLA (Expansin-lik... |
Apr 9, 2020 - Expansin Engineering Database
Buchholz, Patrick C. F., 2020, "Expansin homologues in actinobacterial genomes from South Africa", https://doi.org/10.18419/DARUS-699, DaRUS, V1
Hit sequences for putative expansins (or expansin domains) are reported from an exemplary genome screening. Five actinobacterial genomes were selected to show the application of the Expansin Engineering Database (ExED) for the identification of expansin domains. The original nucleic acid sequences were translated by the standard codon usage table i... |
Unknown - 1.3 KB -
MD5: 00f8e0957e042214a2c935343fae28f9
FASTA file of protein sequences (amino acid symbols). The numbers in the headers correspond to the hits mentioned in the Supporting Information file from Lohoff et al. 2020. |
Unknown - 4.0 KB -
MD5: 7dbd7e182fdf07bf4bd300fbd68ed0a4
FASTA file of nucleic acid sequences. The numbers in the headers correspond to the hits mentioned in the Supporting Information file from Lohoff et al. 2020. |
Apr 9, 2020 - Expansin Engineering Database
Lohoff, Caroline, 2020, "Occurrence of expansins in the tree of life", https://doi.org/10.18419/DARUS-693, DaRUS, V1, UNF:6:eK0oQia4QiaiEO0m1BJFeA== [fileUNF]
Comparison between expansins found in the Expansin Engineering Database (ExED) and literature. |
Apr 9, 2020 -
Occurrence of expansins in the tree of life
Tabular Data - 4.0 KB - 6 Variables, 90 Observations - UNF:6:eK0oQia4QiaiEO0m1BJFeA==
Tabular comparison between the occurrences of expansins in different taxa as reported in the Expansin Engineering Database (ExED) and Chase et al. (2020):
Name of the taxonomic superkingdom;
Name of the (major) taxonomic group reported in Chase et al. 2020;
Lineage contains expansin genes after Chase et al. 2020 (Yes or No);
Lineage contains ex... |
Apr 2, 2020Bioinformatics
Supporting information and original files for bioinformatic investigations using the Expansin Engineering Database (https://exed.biocatnet.de/) |
Jeltsch, Albert; Bashtrykov, Pavel; Emperle, Max; Adam, Sabrina; Dukatz, Michael, 2020, "Deep enzymology data related to Gao et al.: Comprehensive structure-function characterization of DNMT3B and DNMT3A reveals distinctive de novo DNA methylation mechanisms", https://doi.org/10.18419/DARUS-627, DaRUS, V1
Experimental procedures: Libraries of double stranded DNA substrates with CpG, CpH or CpN sites in randomized sequence context were methlyated by DNMT3A or DNMT3B. Reactions were stopped by shock freezing in liquid nitrogen, then treated with proteinase K for 2 hours. Afterwards, the DNA was digested with the BsaI-HFv2 enzyme and a hairpin was liga... |
Plain Text - 5.2 MB -
MD5: 46059e867a2ce12a3002bdc1fb769348
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