Institute of Biochemistry

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1,231 to 1,240 of 1,303 Results

Glycoside Hydrolase 19 Engineering Database(Universität Stuttgart) May 18, 2020Bioinformatics Supporting information and original files for bioinformatic investigations using the Glycoside Hydrolase 19 Engineering Database (https://gh19ed.biocatnet.de/)
Conserved_amino_acids_in_C-terminal_domain.tab Apr 9, 2020 - Conserved positions in expansin homologues Tabular Data - 7.3 KB - 8 Variables, 85 Observations - UNF:6:CE90w0ai1+p+rVxLddj0OA== Conserved positions in the C-terminal expansin domain with standard numbering according to PDB entry 4FER (Bacillus subtilis EXLX1, first column). The amino acids and their occurrence in % are given for different groups of sequences: (Bacteria (column 2), Fungi (column 3), EXPA (Expansin A, column 4), EXPB (Expansin B, column 5), EXLA (Expansin-lik...
Conserved_amino_acids_in_N-terminal_domain.tab Apr 9, 2020 - Conserved positions in expansin homologues Tabular Data - 9.8 KB - 8 Variables, 123 Observations - UNF:6:ztPrC1aaxgvhz6A2pKE7oA== Conserved positions in the N-terminal expansin domain with standard numbering according to PDB entry 4FER (Bacillus subtilis EXLX1, first column). The amino acids and their occurrence in % are given for different groups of sequences: (Bacteria (column 2), Fungi (column 3), EXPA (Expansin A, column 4), EXPB (Expansin B, column 5), EXLA (Expansin-lik...
hits_aa.fasta Apr 9, 2020 - Expansin homologues in actinobacterial genomes from South Africa Unknown - 1.3 KB - MD5: 00f8e0957e042214a2c935343fae28f9 FASTA file of protein sequences (amino acid symbols). The numbers in the headers correspond to the hits mentioned in the Supporting Information file from Lohoff et al. 2020.
hits_nt.fasta Apr 9, 2020 - Expansin homologues in actinobacterial genomes from South Africa Unknown - 4.0 KB - MD5: 7dbd7e182fdf07bf4bd300fbd68ed0a4 FASTA file of nucleic acid sequences. The numbers in the headers correspond to the hits mentioned in the Supporting Information file from Lohoff et al. 2020.
Taxonomic_analysis.tab Apr 9, 2020 - Occurrence of expansins in the tree of life Tabular Data - 4.0 KB - 6 Variables, 90 Observations - UNF:6:eK0oQia4QiaiEO0m1BJFeA== Tabular comparison between the occurrences of expansins in different taxa as reported in the Expansin Engineering Database (ExED) and Chase et al. (2020): Name of the taxonomic superkingdom; Name of the (major) taxonomic group reported in Chase et al. 2020; Lineage contains expansin genes after Chase et al. 2020 (Yes or No); Lineage contains ex...
Expansin Engineering Database(Universität Stuttgart) Apr 2, 2020Bioinformatics Supporting information and original files for bioinformatic investigations using the Expansin Engineering Database (https://exed.biocatnet.de/)
3A 0.5 CN.txt Jan 30, 2020 - Deep enzymology data related to Gao et al.: Comprehensive structure-function characterization of DNMT3B and DNMT3A reveals distinctive de novo DNA methylation mechanisms Plain Text - 5.2 MB - MD5: 46059e867a2ce12a3002bdc1fb769348 Data
3A 10 µM CH.txt Jan 30, 2020 - Deep enzymology data related to Gao et al.: Comprehensive structure-function characterization of DNMT3B and DNMT3A reveals distinctive de novo DNA methylation mechanisms Plain Text - 24.1 MB - MD5: 70e9492316966965904a7f9a7e030492 Data
3A 20 µM CH.txt Jan 30, 2020 - Deep enzymology data related to Gao et al.: Comprehensive structure-function characterization of DNMT3B and DNMT3A reveals distinctive de novo DNA methylation mechanisms Plain Text - 17.3 MB - MD5: 2465a775cf92e1bcf0793322c3adacf0 Data

Glycoside Hydrolase 19 Engineering Database(Universität Stuttgart)

May 18, 2020Bioinformatics

Supporting information and original files for bioinformatic investigations using the Glycoside Hydrolase 19 Engineering Database (https://gh19ed.biocatnet.de/)

Conserved_amino_acids_in_C-terminal_domain.tab

Apr 9, 2020 - Conserved positions in expansin homologues

Tabular Data - 7.3 KB - 8 Variables, 85 Observations -

Conserved positions in the C-terminal expansin domain with standard numbering according to PDB entry 4FER (Bacillus subtilis EXLX1, first column). The amino acids and their occurrence in % are given for different groups of sequences: (Bacteria (column 2), Fungi (column 3), EXPA (Expansin A, column 4), EXPB (Expansin B, column 5), EXLA (Expansin-lik...

Conserved_amino_acids_in_N-terminal_domain.tab

Apr 9, 2020 - Conserved positions in expansin homologues

Tabular Data - 9.8 KB - 8 Variables, 123 Observations -

Conserved positions in the N-terminal expansin domain with standard numbering according to PDB entry 4FER (Bacillus subtilis EXLX1, first column). The amino acids and their occurrence in % are given for different groups of sequences: (Bacteria (column 2), Fungi (column 3), EXPA (Expansin A, column 4), EXPB (Expansin B, column 5), EXLA (Expansin-lik...

hits_aa.fasta

Apr 9, 2020 - Expansin homologues in actinobacterial genomes from South Africa

Unknown - 1.3 KB -

FASTA file of protein sequences (amino acid symbols). The numbers in the headers correspond to the hits mentioned in the Supporting Information file from Lohoff et al. 2020.

hits_nt.fasta

Apr 9, 2020 - Expansin homologues in actinobacterial genomes from South Africa

Unknown - 4.0 KB -

FASTA file of nucleic acid sequences. The numbers in the headers correspond to the hits mentioned in the Supporting Information file from Lohoff et al. 2020.

Taxonomic_analysis.tab

Apr 9, 2020 - Occurrence of expansins in the tree of life

Tabular Data - 4.0 KB - 6 Variables, 90 Observations -

Tabular comparison between the occurrences of expansins in different taxa as reported in the Expansin Engineering Database (ExED) and Chase et al. (2020): Name of the taxonomic superkingdom; Name of the (major) taxonomic group reported in Chase et al. 2020; Lineage contains expansin genes after Chase et al. 2020 (Yes or No); Lineage contains ex...

Expansin Engineering Database(Universität Stuttgart)

Apr 2, 2020Bioinformatics

Supporting information and original files for bioinformatic investigations using the Expansin Engineering Database (https://exed.biocatnet.de/)

3A 0.5 CN.txt

Jan 30, 2020 - Deep enzymology data related to Gao et al.: Comprehensive structure-function characterization of DNMT3B and DNMT3A reveals distinctive de novo DNA methylation mechanisms

Plain Text - 5.2 MB -

Data

3A 10 µM CH.txt

Jan 30, 2020 - Deep enzymology data related to Gao et al.: Comprehensive structure-function characterization of DNMT3B and DNMT3A reveals distinctive de novo DNA methylation mechanisms

Plain Text - 24.1 MB -

Data

3A 20 µM CH.txt