Institute of Biochemistry

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1,201 to 1,210 of 1,362 Results

PMH.aln May 12, 2021 - Consensus sequences of arylsulfatases and phosphonate monoester hydrolases Unknown - 61.7 KB - MD5: 68593cdf74879917c223c38d1a5de53d Multiple sequence alignment in Clustal format for 85 homologues of phosphonate monoester hydrolases
PMH-consensus.fasta May 12, 2021 - Consensus sequences of arylsulfatases and phosphonate monoester hydrolases Unknown - 533 B - MD5: 0ed2f30d99bb5097faa06a79bed43ada FASTA file containing the consensus protein sequence of phosphonate monoester hydrolases based on the profile hidden Markov model in PMH.hmm
PMH.hmm May 12, 2021 - Consensus sequences of arylsulfatases and phosphonate monoester hydrolases Unknown - 232.1 KB - MD5: a570ab6b46dedfc2dffaea46aa542445 Profile hidden Markov model in HMMER3 format based on the multiple sequence alignment in PMH.aln
Protein sequences of arylsulfatases, phosphonate monoester hydrolases, and reconstructed ancestors May 3, 2021 - Bioinformatics Heberlein, Magdalena, 2021, "Protein sequences of arylsulfatases, phosphonate monoester hydrolases, and reconstructed ancestors", https://doi.org/10.18419/DARUS-1801, DaRUS, V1 Protein sequences were derived from a maximum-likelihood phylogenetic tree for arylsulfatases and phosphonate monoester hydrolases, including a selection of reconstructed ancestral sequences.
AS_PMH_ancestors.fasta May 3, 2021 - Protein sequences of arylsulfatases, phosphonate monoester hydrolases, and reconstructed ancestors Unknown - 126.7 KB - MD5: 997793d158069bf670672467978a1688 FASTA file for 238 protein sequences
GraphML file for homologues and reconstructed ancestors of arylsulfatases and phosphonate monoester hydrolases May 3, 2021 - Bioinformatics Buchholz, Patrick C. F., 2021, "GraphML file for homologues and reconstructed ancestors of arylsulfatases and phosphonate monoester hydrolases", https://doi.org/10.18419/DARUS-817, DaRUS, V1 Protein sequence network for homologues of arylsulfatases and phosphonate monoester hydrolases, including reconstructed ancestral sequences from a maximum-likelihood phylogenetic tree.
AS_PMH_ancestors.graphml May 3, 2021 - GraphML file for homologues and reconstructed ancestors of arylsulfatases and phosphonate monoester hydrolases GraphML Network Data - 2.2 MB - MD5: db9ccb4159a785f02c2e3ae2135d321f GraphML formatted file for an undirected graph (network) containing 238 nodes connected by 28,203 edges.
Data related to "Structural and biochemical insight into the mechanism of dual CpG site binding and methylation by DNMT3A" Apr 12, 2021 - Amplicon based bisulfite NGS data Jeltsch, Albert; Bashtrykov, Pavel; Adam, Sabrina; Kunert, Stefan, 2021, "Data related to "Structural and biochemical insight into the mechanism of dual CpG site binding and methylation by DNMT3A"", https://doi.org/10.18419/DARUS-1781, DaRUS, V1 Methylation of substrate libraries Single-stranded DNA oligonucleotides used for generation of double stranded substrates with different distance between CpG sites were obtained from IDT. Sixteen single-stranded oligonucleotides were pooled in equimolar amounts and the second strand synthesis was conducted by a primer extension reaction using one u...
DNMT3A_0.25uM.txt Apr 12, 2021 - Data related to "Structural and biochemical insight into the mechanism of dual CpG site binding and methylation by DNMT3A" Plain Text - 21.9 MB - MD5: 0d51508278cd9213927a126f1dd3875b
DNMT3A_0.5uM.txt Apr 12, 2021 - Data related to "Structural and biochemical insight into the mechanism of dual CpG site binding and methylation by DNMT3A" Plain Text - 19.1 MB - MD5: 598bc38302a087dc28853a3974dddb58

PMH.aln

May 12, 2021 - Consensus sequences of arylsulfatases and phosphonate monoester hydrolases

Unknown - 61.7 KB -

Multiple sequence alignment in Clustal format for 85 homologues of phosphonate monoester hydrolases

PMH-consensus.fasta

May 12, 2021 - Consensus sequences of arylsulfatases and phosphonate monoester hydrolases

Unknown - 533 B -

FASTA file containing the consensus protein sequence of phosphonate monoester hydrolases based on the profile hidden Markov model in PMH.hmm

PMH.hmm

May 12, 2021 - Consensus sequences of arylsulfatases and phosphonate monoester hydrolases

Unknown - 232.1 KB -

Profile hidden Markov model in HMMER3 format based on the multiple sequence alignment in PMH.aln

Protein sequences of arylsulfatases, phosphonate monoester hydrolases, and reconstructed ancestors

May 3, 2021 - Bioinformatics

Heberlein, Magdalena, 2021, "Protein sequences of arylsulfatases, phosphonate monoester hydrolases, and reconstructed ancestors", https://doi.org/10.18419/DARUS-1801, DaRUS, V1

Protein sequences were derived from a maximum-likelihood phylogenetic tree for arylsulfatases and phosphonate monoester hydrolases, including a selection of reconstructed ancestral sequences.

AS_PMH_ancestors.fasta

May 3, 2021 - Protein sequences of arylsulfatases, phosphonate monoester hydrolases, and reconstructed ancestors

Unknown - 126.7 KB -

FASTA file for 238 protein sequences

GraphML file for homologues and reconstructed ancestors of arylsulfatases and phosphonate monoester hydrolases

May 3, 2021 - Bioinformatics

Buchholz, Patrick C. F., 2021, "GraphML file for homologues and reconstructed ancestors of arylsulfatases and phosphonate monoester hydrolases", https://doi.org/10.18419/DARUS-817, DaRUS, V1

Protein sequence network for homologues of arylsulfatases and phosphonate monoester hydrolases, including reconstructed ancestral sequences from a maximum-likelihood phylogenetic tree.

AS_PMH_ancestors.graphml

May 3, 2021 - GraphML file for homologues and reconstructed ancestors of arylsulfatases and phosphonate monoester hydrolases

GraphML Network Data - 2.2 MB -

GraphML formatted file for an undirected graph (network) containing 238 nodes connected by 28,203 edges.

Data related to "Structural and biochemical insight into the mechanism of dual CpG site binding and methylation by DNMT3A"

Apr 12, 2021 - Amplicon based bisulfite NGS data

Jeltsch, Albert; Bashtrykov, Pavel; Adam, Sabrina; Kunert, Stefan, 2021, "Data related to "Structural and biochemical insight into the mechanism of dual CpG site binding and methylation by DNMT3A"", https://doi.org/10.18419/DARUS-1781, DaRUS, V1

Methylation of substrate libraries Single-stranded DNA oligonucleotides used for generation of double stranded substrates with different distance between CpG sites were obtained from IDT. Sixteen single-stranded oligonucleotides were pooled in equimolar amounts and the second strand synthesis was conducted by a primer extension reaction using one u...

DNMT3A_0.25uM.txt

Apr 12, 2021 - Data related to "Structural and biochemical insight into the mechanism of dual CpG site binding and methylation by DNMT3A"

Plain Text - 21.9 MB -

DNMT3A_0.5uM.txt

Apr 12, 2021 - Data related to "Structural and biochemical insight into the mechanism of dual CpG site binding and methylation by DNMT3A"

Plain Text - 19.1 MB -

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