Institute of Biochemistry

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1,091 to 1,100 of 1,362 Results

Oxidation of ABTS by Trametes versicolor laccase Feb 15, 2022 - EnzymeML at work Ngubane, Sandile, 2022, "Oxidation of ABTS by Trametes versicolor laccase", https://doi.org/10.18419/DARUS-2467, DaRUS, V1 Investigated was the oxidation of ABTS and syringaldazine by Trametes versicolor laccase. For this, the concentration of the substrate over time was measured, for different initial concentrations. All measurements were repeated for three replicates.
ABTS_Measurement.omex Feb 15, 2022 - Oxidation of ABTS by Trametes versicolor laccase Plain Text - 7.8 KB - MD5: 63e5dea9ce74e53c79186ed4999cfef5
InsightIntoMechanismByModelling.ipynb Feb 15, 2022 - Oxidation of ABTS by Trametes versicolor laccase Jupyter Notebook - 339.6 KB - MD5: d90e44f2274a452074895e7fb6217e9f Jupyter Notebook used to model the data given in the OMEX EnzymeML archive
Propioin Synthesis using Benzoin Aldolase Feb 15, 2022 - EnzymeML at work Spöring, Jan-Dirk, 2022, "Propioin Synthesis using Benzoin Aldolase", https://doi.org/10.18419/DARUS-2466, DaRUS, V1 Investigated was the ligation of two molecules propanal in organic conditions, catalysed by the benzoin aldolase, which was added in the form of lyophillised whole cells. The reaction was performed in triplicate, with 200 mM as the starting concentration of the propanal in all cases. Triethanolamine was chosen as buffer, together with Cyclopentyl m...
CollectingDataByBioCatHubAndVisualisation.ipynb Feb 15, 2022 - Propioin Synthesis using Benzoin Aldolase Jupyter Notebook - 20.9 KB - MD5: bc9c3f0840a676ccdc6b8804a5aaf583 Jupyter Notebook that was used to model the given OMEX EnzymeML archive
PropioinSynthesis_Spoering.omex Feb 15, 2022 - Propioin Synthesis using Benzoin Aldolase Plain Text - 3.3 KB - MD5: 344913d82c8cf442d7332088fcfcbf4b
EnzymeML at work(Universität Stuttgart) Feb 7, 2022EnzymeML Supplementary datasets for the publication "EnzymeML at work".
Python scripts related to MD simulations in "Preferential interaction of DNMT3A subunits containing the R882H cancer mutation leads to dominant changes of flanking sequence effects" Feb 1, 2022 - MD Simulations Jeltsch, Albert; Schnee, Philipp; Pleiss, Jürgen, 2022, "Python scripts related to MD simulations in "Preferential interaction of DNMT3A subunits containing the R882H cancer mutation leads to dominant changes of flanking sequence effects"", https://doi.org/10.18419/DARUS-2463, DaRUS, V1 Python scripts used for the Molecular Dynamics Simulation presented in "Preferential interaction of DNMT3A subunits containing the R882H cancer mutation leads to dominant changes of flanking sequence effects"
DNMT3A-Contact_Maps_Analysis.py Feb 1, 2022 - Python scripts related to MD simulations in "Preferential interaction of DNMT3A subunits containing the R882H cancer mutation leads to dominant changes of flanking sequence effects" Python Source Code - 2.2 KB - MD5: 98b002df389163006be76edf112c4295 Python script for analysis of contact maps
DNMT3A-Contact_Maps.py Feb 1, 2022 - Python scripts related to MD simulations in "Preferential interaction of DNMT3A subunits containing the R882H cancer mutation leads to dominant changes of flanking sequence effects" Python Source Code - 14.8 KB - MD5: 1ce54f7a25b07f85623b571fa3ac8244 Python script for calculation of contact maps

Oxidation of ABTS by Trametes versicolor laccase

Feb 15, 2022 - EnzymeML at work

Ngubane, Sandile, 2022, "Oxidation of ABTS by Trametes versicolor laccase", https://doi.org/10.18419/DARUS-2467, DaRUS, V1

Investigated was the oxidation of ABTS and syringaldazine by Trametes versicolor laccase. For this, the concentration of the substrate over time was measured, for different initial concentrations. All measurements were repeated for three replicates.

ABTS_Measurement.omex

Feb 15, 2022 - Oxidation of ABTS by Trametes versicolor laccase

Plain Text - 7.8 KB -

InsightIntoMechanismByModelling.ipynb

Feb 15, 2022 - Oxidation of ABTS by Trametes versicolor laccase

Jupyter Notebook - 339.6 KB -

Jupyter Notebook used to model the data given in the OMEX EnzymeML archive

Propioin Synthesis using Benzoin Aldolase

Feb 15, 2022 - EnzymeML at work

Spöring, Jan-Dirk, 2022, "Propioin Synthesis using Benzoin Aldolase", https://doi.org/10.18419/DARUS-2466, DaRUS, V1

Investigated was the ligation of two molecules propanal in organic conditions, catalysed by the benzoin aldolase, which was added in the form of lyophillised whole cells. The reaction was performed in triplicate, with 200 mM as the starting concentration of the propanal in all cases. Triethanolamine was chosen as buffer, together with Cyclopentyl m...

CollectingDataByBioCatHubAndVisualisation.ipynb

Feb 15, 2022 - Propioin Synthesis using Benzoin Aldolase

Jupyter Notebook - 20.9 KB -

Jupyter Notebook that was used to model the given OMEX EnzymeML archive

PropioinSynthesis_Spoering.omex

Feb 15, 2022 - Propioin Synthesis using Benzoin Aldolase

Plain Text - 3.3 KB -

EnzymeML at work(Universität Stuttgart)

Feb 7, 2022EnzymeML

Supplementary datasets for the publication "EnzymeML at work".

Python scripts related to MD simulations in "Preferential interaction of DNMT3A subunits containing the R882H cancer mutation leads to dominant changes of flanking sequence effects"

Feb 1, 2022 - MD Simulations

Jeltsch, Albert; Schnee, Philipp; Pleiss, Jürgen, 2022, "Python scripts related to MD simulations in "Preferential interaction of DNMT3A subunits containing the R882H cancer mutation leads to dominant changes of flanking sequence effects"", https://doi.org/10.18419/DARUS-2463, DaRUS, V1

Python scripts used for the Molecular Dynamics Simulation presented in "Preferential interaction of DNMT3A subunits containing the R882H cancer mutation leads to dominant changes of flanking sequence effects"

DNMT3A-Contact_Maps_Analysis.py

Feb 1, 2022 - Python scripts related to MD simulations in "Preferential interaction of DNMT3A subunits containing the R882H cancer mutation leads to dominant changes of flanking sequence effects"

Python Source Code - 2.2 KB -

Python script for analysis of contact maps

DNMT3A-Contact_Maps.py

Feb 1, 2022 - Python scripts related to MD simulations in "Preferential interaction of DNMT3A subunits containing the R882H cancer mutation leads to dominant changes of flanking sequence effects"

Python Source Code - 14.8 KB -

Python script for calculation of contact maps

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