Institute of Biochemistry

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1,101 to 1,110 of 1,362 Results

DNMT3A-Contact_Maps_Statistics.py Feb 1, 2022 - Python scripts related to MD simulations in "Preferential interaction of DNMT3A subunits containing the R882H cancer mutation leads to dominant changes of flanking sequence effects" Python Source Code - 14.3 KB - MD5: 0cdbaa4cd00a345ca9a1ef24269d99e2 Python script for calculation of contact maps
DNMT3A-Production.py Feb 1, 2022 - Python scripts related to MD simulations in "Preferential interaction of DNMT3A subunits containing the R882H cancer mutation leads to dominant changes of flanking sequence effects" Python Source Code - 15.1 KB - MD5: f0e0d16dc77a1188ad2552338805d4f3 Pyton script for calculation of contact maps
MD Simulations(Universität Stuttgart) Jan 31, 2022Department of Molecular Biochemistry
Deep enzymology data related to Adam et al.: Flanking sequences influence the activity of TET1 and TET2 methylcytosine dioxygenases and affect genomic 5hmC patterns Dec 17, 2021 - Amplicon based bisulfite NGS data Jeltsch, Albert; Bashtrykov, Pavel; Adam, Sabrina, 2021, "Deep enzymology data related to Adam et al.: Flanking sequences influence the activity of TET1 and TET2 methylcytosine dioxygenases and affect genomic 5hmC patterns", https://doi.org/10.18419/DARUS-2114, DaRUS, V2 Experimental procedures for deep enzymology reactions with randomized substrates: For analysis of flanking sequence preferences of the TET enzymes, a similar approach as described for DNMTs (Emperle et al., 2019; Gao et al., 2020; Adam et al., 2020; Dukatz et al., 2020) was used. Briefly, the following single-stranded oligonucleotides containing a...
HM CG control.fastqsanger Dec 17, 2021 - Deep enzymology data related to Adam et al.: Flanking sequences influence the activity of TET1 and TET2 methylcytosine dioxygenases and affect genomic 5hmC patterns Unknown - 42.6 MB - MD5: d526c1366b7b4d94b2132fc945630a2c
HM CN control.fastqsanger Dec 17, 2021 - Deep enzymology data related to Adam et al.: Flanking sequences influence the activity of TET1 and TET2 methylcytosine dioxygenases and affect genomic 5hmC patterns Unknown - 11.3 MB - MD5: 3d83ceae76c77368d3c3cd2fefc102c5
OH CG control.fastqsanger Dec 17, 2021 - Deep enzymology data related to Adam et al.: Flanking sequences influence the activity of TET1 and TET2 methylcytosine dioxygenases and affect genomic 5hmC patterns Unknown - 64.3 MB - MD5: 9d61d6d62de5d2d5d0cee8ed3be318aa
TET1 CN R1.fastqsanger Dec 17, 2021 - Deep enzymology data related to Adam et al.: Flanking sequences influence the activity of TET1 and TET2 methylcytosine dioxygenases and affect genomic 5hmC patterns Unknown - 82.7 MB - MD5: a73ef7f9aef5f30a9d00807a0222b3b1
TET1 CN R2.fastqsanger Dec 17, 2021 - Deep enzymology data related to Adam et al.: Flanking sequences influence the activity of TET1 and TET2 methylcytosine dioxygenases and affect genomic 5hmC patterns Unknown - 36.2 MB - MD5: 434faa3b73de73227d1790a04d719cca
TET1 HM R1.fastqsanger Dec 17, 2021 - Deep enzymology data related to Adam et al.: Flanking sequences influence the activity of TET1 and TET2 methylcytosine dioxygenases and affect genomic 5hmC patterns Unknown - 9.3 MB - MD5: 9ad669605ba9c6881b76eedf2d7ecd3b

DNMT3A-Contact_Maps_Statistics.py

Feb 1, 2022 - Python scripts related to MD simulations in "Preferential interaction of DNMT3A subunits containing the R882H cancer mutation leads to dominant changes of flanking sequence effects"

Python Source Code - 14.3 KB -

Python script for calculation of contact maps

DNMT3A-Production.py

Feb 1, 2022 - Python scripts related to MD simulations in "Preferential interaction of DNMT3A subunits containing the R882H cancer mutation leads to dominant changes of flanking sequence effects"

Python Source Code - 15.1 KB -

Pyton script for calculation of contact maps

MD Simulations(Universität Stuttgart)

Jan 31, 2022Department of Molecular Biochemistry

Deep enzymology data related to Adam et al.: Flanking sequences influence the activity of TET1 and TET2 methylcytosine dioxygenases and affect genomic 5hmC patterns

Dec 17, 2021 - Amplicon based bisulfite NGS data

Jeltsch, Albert; Bashtrykov, Pavel; Adam, Sabrina, 2021, "Deep enzymology data related to Adam et al.: Flanking sequences influence the activity of TET1 and TET2 methylcytosine dioxygenases and affect genomic 5hmC patterns", https://doi.org/10.18419/DARUS-2114, DaRUS, V2

Experimental procedures for deep enzymology reactions with randomized substrates: For analysis of flanking sequence preferences of the TET enzymes, a similar approach as described for DNMTs (Emperle et al., 2019; Gao et al., 2020; Adam et al., 2020; Dukatz et al., 2020) was used. Briefly, the following single-stranded oligonucleotides containing a...

HM CG control.fastqsanger

Dec 17, 2021 - Deep enzymology data related to Adam et al.: Flanking sequences influence the activity of TET1 and TET2 methylcytosine dioxygenases and affect genomic 5hmC patterns

Unknown - 42.6 MB -

HM CN control.fastqsanger

Dec 17, 2021 - Deep enzymology data related to Adam et al.: Flanking sequences influence the activity of TET1 and TET2 methylcytosine dioxygenases and affect genomic 5hmC patterns

Unknown - 11.3 MB -

OH CG control.fastqsanger

Dec 17, 2021 - Deep enzymology data related to Adam et al.: Flanking sequences influence the activity of TET1 and TET2 methylcytosine dioxygenases and affect genomic 5hmC patterns

Unknown - 64.3 MB -

TET1 CN R1.fastqsanger

Dec 17, 2021 - Deep enzymology data related to Adam et al.: Flanking sequences influence the activity of TET1 and TET2 methylcytosine dioxygenases and affect genomic 5hmC patterns

Unknown - 82.7 MB -