DaRUS

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Publication Year: 2024

101 to 110 of 46,483 Results

Code and benchmarks for geometry-informed drag term computation for pseudo-3D Stokes simulations with varying apertures Dec 20, 2024 - Publication: A novel geometry-informed drag term formulation for pseudo-3D Stokes simulations with varying apertures Krach, David; Weinhardt, Felix; Wang, Mingfeng; Schneider, Martin; Class, Holger; Steeb, Holger, 2024, "Code and benchmarks for geometry-informed drag term computation for pseudo-3D Stokes simulations with varying apertures", https://doi.org/10.18419/DARUS-4313, DaRUS, V2 Content: This data set includes snapshots of the code used to compute the benchmarks and applications in Krach et al.(2024). All software tools provided enable the user to perform pseudo-3D Stokes simulations with a geometry-informed drag term using DuMux and to determine permeability, volumetric flux as well as local pressure and velocity fields f...
localdrag.tar.gz Dec 20, 2024 - Code and benchmarks for geometry-informed drag term computation for pseudo-3D Stokes simulations with varying apertures Gzip Archive - 110.2 KB - MD5: 9184f049d4cee0af1e10ea48529bf0f3 localdrag python module
Pseudo3D_Stokes.tar.gz Dec 20, 2024 - Code and benchmarks for geometry-informed drag term computation for pseudo-3D Stokes simulations with varying apertures Gzip Archive - 2.3 MB - MD5: 04abee75c9fb1dca64cdaa9b68cf28f8 Pseudo3D_Stokes DuMux submodule
KR-Building (EXC IntCDC)(Universität Stuttgart) Dec 19, 2024Analytic Computing Project Website: https://www.ki.uni-stuttgart.de/departments/ac/research/projects/Kr-building/
Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences Dec 19, 2024 - Modelling Spindler, Jan; Giakissiklis, Christina; Stierle, Catharina; Buschlüter, Marc; Liebeton, Klaus; Siemann-Herzberg, Martin; Takors, Ralf, 2024, "Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences", https://doi.org/10.18419/DARUS-4628, DaRUS, V1 The DaRUS repository entails and supplements the simulation data, MATLAB model and graphics for the publication: "Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences"
0_README_repository_structure.txt Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences Plain Text - 560 B - MD5: bbd8064eeb4281aeef2b5aee767e0953
alpha_struc_generation_pl.m Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences MATLAB Source Code - 2.7 KB - MD5: ad0de1b8638fc09a40582a3832a22398 Helper script to MAIN scripts.
aminoacids.dat Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences Fixed Field Text Data - 472 B - MD5: 70c961fa3e5beba17308d54572ffb454
analyze_data.m Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences MATLAB Source Code - 4.2 KB - MD5: ed2ea91495d19f89ddef5908d4ac743d Helper script to MAIN scripts.
AS_and_Codon.dat Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences Fixed Field Text Data - 712 B - MD5: e05f78d406e21c4f05160bfc19c25b87

Code and benchmarks for geometry-informed drag term computation for pseudo-3D Stokes simulations with varying apertures

Dec 20, 2024 - Publication: A novel geometry-informed drag term formulation for pseudo-3D Stokes simulations with varying apertures

Krach, David; Weinhardt, Felix; Wang, Mingfeng; Schneider, Martin; Class, Holger; Steeb, Holger, 2024, "Code and benchmarks for geometry-informed drag term computation for pseudo-3D Stokes simulations with varying apertures", https://doi.org/10.18419/DARUS-4313, DaRUS, V2

Content: This data set includes snapshots of the code used to compute the benchmarks and applications in Krach et al.(2024). All software tools provided enable the user to perform pseudo-3D Stokes simulations with a geometry-informed drag term using DuMux and to determine permeability, volumetric flux as well as local pressure and velocity fields f...

localdrag.tar.gz

Dec 20, 2024 - Code and benchmarks for geometry-informed drag term computation for pseudo-3D Stokes simulations with varying apertures

Gzip Archive - 110.2 KB -

localdrag python module

Pseudo3D_Stokes.tar.gz

Dec 20, 2024 - Code and benchmarks for geometry-informed drag term computation for pseudo-3D Stokes simulations with varying apertures

Gzip Archive - 2.3 MB -

Pseudo3D_Stokes DuMux submodule

KR-Building (EXC IntCDC)(Universität Stuttgart)

Dec 19, 2024Analytic Computing

Project Website: https://www.ki.uni-stuttgart.de/departments/ac/research/projects/Kr-building/

Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences

Dec 19, 2024 - Modelling

Spindler, Jan; Giakissiklis, Christina; Stierle, Catharina; Buschlüter, Marc; Liebeton, Klaus; Siemann-Herzberg, Martin; Takors, Ralf, 2024, "Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences", https://doi.org/10.18419/DARUS-4628, DaRUS, V1

The DaRUS repository entails and supplements the simulation data, MATLAB model and graphics for the publication: "Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences"

0_README_repository_structure.txt

Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences

Plain Text - 560 B -

alpha_struc_generation_pl.m

Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences

MATLAB Source Code - 2.7 KB -

Helper script to MAIN scripts.

aminoacids.dat

Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences

Fixed Field Text Data - 472 B -

analyze_data.m

Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences