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publicationDate: 2021

111 to 120 of 46,329 Results

processing_script.ipynb Dec 2, 2021 - Data for: On the role of density-driven dissolution of CO2 in karstification Jupyter Notebook - 28.5 KB - MD5: 78b21cdc3655f6b9464e1025903a65d0 Processing script to reproduce the processed data from the raw data via Jupyter Notebook
raw_data.tab Dec 2, 2021 - Data for: On the role of density-driven dissolution of CO2 in karstification Tabular Data - 4.1 MB - 8 Variables, 86401 Observations - UNF:6:jDoGRsS1EyUrWy+IwM3wZQ== Raw data of the "density-driven dissolution of CO2 in karst water" column 60 days experiment
sherwood.xlsx Dec 2, 2021 - Data for: On the role of density-driven dissolution of CO2 in karstification MS Excel Spreadsheet - 35.8 KB - MD5: e427555a1305bedeb7d70cf6f69f0947 Calculated sherwood number and required data to calculate sherwood number. Sim1: Simulation with measured atmospheric CO2 concentration. Sim2: Simulation with (assumed) constant atmospheric CO2 concentration of 20,000 ppm
GraphML files for sequence networks of PETases and PURases Dec 1, 2021 - Plastics-Active Enzymes Database Buchholz, Patrick C. F., 2021, "GraphML files for sequence networks of PETases and PURases", https://doi.org/10.18419/DARUS-2054, DaRUS, V1 The GraphML files contain the sequence networks and annotated metadata for protein sequences.
PET_local_08_55sim.graphml Dec 1, 2021 - GraphML files for sequence networks of PETases and PURases GraphML Network Data - 5.8 MB - MD5: abddf6c05feb40d68c3c5cbed3f21d2b Protein sequence network for PETase homologues. Edges were selected at a threshold of 55% pairwise sequence identity.
Sfam11_09_60sim.graphml Dec 1, 2021 - GraphML files for sequence networks of PETases and PURases GraphML Network Data - 557.2 KB - MD5: 7cd626f025e5d7a0a253281649894b7f Protein sequence network for PURase homologues from LED superfamily 11. Edges were selected at a threshold of 60% pairwise sequence identity.
Sfam13_09_60sim.graphml Dec 1, 2021 - GraphML files for sequence networks of PETases and PURases GraphML Network Data - 16.2 KB - MD5: e93342540254b2c25b2826343947b22b Protein sequence network for PURase homologues from LED superfamily 13. Edges were selected at a threshold of 60% pairwise sequence identity.
Profile hidden Markov model for PETase homologues Dec 1, 2021 - Plastics-Active Enzymes Database Buchholz, Patrick C. F., 2021, "Profile hidden Markov model for PETase homologues", https://doi.org/10.18419/DARUS-2055, DaRUS, V1, UNF:6:AEjnqfOrnimO5Q2xFDkQDw== [fileUNF] Sixteen protein sequences for enzymes with known activity against polyethylene terephthalate (PET) were clustered using CD-HIT to derive a reduced set of twelve centroid sequences. These twelve protein sequences were aligned in a structure-guided multiple sequence alignment by T-COFFEE. A profile hidden Markov model (HMM) was derived from this mult...
PET_09_tcoffee.aln Dec 1, 2021 - Profile hidden Markov model for PETase homologues Unknown - 7.2 KB - MD5: e81a1a25f3e79e189a048e1a04756cbc Multiple sequence alignment in Clustal format.
PET_09_tcoffee.hmm Dec 1, 2021 - Profile hidden Markov model for PETase homologues Unknown - 122.2 KB - MD5: 7fa623dde96d25f2919f75b497b2f657 Profile hidden Markov model in HMMER3 format

processing_script.ipynb

Dec 2, 2021 - Data for: On the role of density-driven dissolution of CO2 in karstification

Jupyter Notebook - 28.5 KB -

Processing script to reproduce the processed data from the raw data via Jupyter Notebook

raw_data.tab

Dec 2, 2021 - Data for: On the role of density-driven dissolution of CO2 in karstification

Tabular Data - 4.1 MB - 8 Variables, 86401 Observations -

Raw data of the "density-driven dissolution of CO2 in karst water" column 60 days experiment

sherwood.xlsx

Dec 2, 2021 - Data for: On the role of density-driven dissolution of CO2 in karstification

MS Excel Spreadsheet - 35.8 KB -

Calculated sherwood number and required data to calculate sherwood number. Sim1: Simulation with measured atmospheric CO2 concentration. Sim2: Simulation with (assumed) constant atmospheric CO2 concentration of 20,000 ppm

GraphML files for sequence networks of PETases and PURases

Dec 1, 2021 - Plastics-Active Enzymes Database

Buchholz, Patrick C. F., 2021, "GraphML files for sequence networks of PETases and PURases", https://doi.org/10.18419/DARUS-2054, DaRUS, V1

The GraphML files contain the sequence networks and annotated metadata for protein sequences.

PET_local_08_55sim.graphml

Dec 1, 2021 - GraphML files for sequence networks of PETases and PURases

GraphML Network Data - 5.8 MB -

Protein sequence network for PETase homologues. Edges were selected at a threshold of 55% pairwise sequence identity.

Sfam11_09_60sim.graphml

Dec 1, 2021 - GraphML files for sequence networks of PETases and PURases

GraphML Network Data - 557.2 KB -

Protein sequence network for PURase homologues from LED superfamily 11. Edges were selected at a threshold of 60% pairwise sequence identity.

Sfam13_09_60sim.graphml

Dec 1, 2021 - GraphML files for sequence networks of PETases and PURases

GraphML Network Data - 16.2 KB -

Protein sequence network for PURase homologues from LED superfamily 13. Edges were selected at a threshold of 60% pairwise sequence identity.

Profile hidden Markov model for PETase homologues

Dec 1, 2021 - Plastics-Active Enzymes Database

Buchholz, Patrick C. F., 2021, "Profile hidden Markov model for PETase homologues", https://doi.org/10.18419/DARUS-2055, DaRUS, V1, UNF:6:AEjnqfOrnimO5Q2xFDkQDw== [fileUNF]

Sixteen protein sequences for enzymes with known activity against polyethylene terephthalate (PET) were clustered using CD-HIT to derive a reduced set of twelve centroid sequences. These twelve protein sequences were aligned in a structure-guided multiple sequence alignment by T-COFFEE. A profile hidden Markov model (HMM) was derived from this mult...

PET_09_tcoffee.aln

Dec 1, 2021 - Profile hidden Markov model for PETase homologues

Unknown - 7.2 KB -

Multiple sequence alignment in Clustal format.

PET_09_tcoffee.hmm

Dec 1, 2021 - Profile hidden Markov model for PETase homologues

Unknown - 122.2 KB -

Profile hidden Markov model in HMMER3 format

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