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321 to 330 of 4,807 Results

compositional-coupling-experiment-new.tar.xz Feb 12, 2025 - Replication Data for: Partitioned Multiphysics Simulation of an Electrophysiological Three-Tendon-Biceps Model XZ Archive - 91.5 MB - MD5: 76ede7977703bbf1f3ea4eb10ddef81f Setup files and results for section "Compositional Coupling" using OpenDiHu only
dealii-code-and-participants.tar.gz Feb 12, 2025 - Replication Data for: Partitioned Multiphysics Simulation of an Electrophysiological Three-Tendon-Biceps Model Gzip Archive - 2.2 MB - MD5: d80ebcdeacaa0045c135ee87380ca7a7 Code, mesh logs and parameter files to run tendons with a deal.II solver. This is needed for experiments in "Compositional coupling" combining OpenDiHu and deal.ii and includes profiling results.
opendihu.tar.gz Feb 12, 2025 - Replication Data for: Partitioned Multiphysics Simulation of an Electrophysiological Three-Tendon-Biceps Model Gzip Archive - 1.2 GB - MD5: 6e696b22ef581ac0d13e6cbe01a56553
surface-coupling-experiments.tar.gz Feb 12, 2025 - Replication Data for: Partitioned Multiphysics Simulation of an Electrophysiological Three-Tendon-Biceps Model Gzip Archive - 567.6 KB - MD5: 3ee9b59da0344ca2ead000b9837be32f Setup and results for the section "Multi coupling of muscle mechanics and three tendon"
volume-coupling-experiments.tar.gz Feb 12, 2025 - Replication Data for: Partitioned Multiphysics Simulation of an Electrophysiological Three-Tendon-Biceps Model Gzip Archive - 106.1 MB - MD5: 08690974f885bc704bb48e7035d83d96 ASTE, setup and coupling meshes used for the section on "Volume coupling of muscle fiber and muscle mechanic"
analysis.tar.gz Feb 7, 2025 - Supplementary Information to "Molecular determinants of solvent nanoseparation by nanoporous carbon materials" Gzip Archive - 2.4 MB - MD5: 3d7fda4ab58d38397eab99173e66054b Analysis scripts and jupyter notebooks
itp_files.tar.gz Feb 7, 2025 - Supplementary Information to "Molecular determinants of solvent nanoseparation by nanoporous carbon materials" Gzip Archive - 15.3 MB - MD5: 83ce7b9c0983db969665945ba94c49ee itp files common to multiple simulations. For completeness this folder also includes the files martini_v.3.0.0.itp and martini_v3.0.0_solvents.itp from the standard martini repository https://github.com/marrink-lab/martini-forcefields/tree/main/martini_forcefields/regular/v3.0.0/gmx_files Please cite PCT Souza, et al., Nat. Methods, 2021. DOI: 10....
markov_model.tar.gz Feb 7, 2025 - Supplementary Information to "Molecular determinants of solvent nanoseparation by nanoporous carbon materials" Gzip Archive - 3.7 MB - MD5: f12cd83220d5a372c0c3e5adcbfb8edd jupyter notebook and input files for the developed markov model describing the first passage times through a cubic material
material_builder.tar.gz Feb 7, 2025 - Supplementary Information to "Molecular determinants of solvent nanoseparation by nanoporous carbon materials" Gzip Archive - 15.4 MB - MD5: 54a5d1fe38249b8b434c3ee00bfbf4f4
simulation_files.tar.gz Feb 7, 2025 - Supplementary Information to "Molecular determinants of solvent nanoseparation by nanoporous carbon materials" Gzip Archive - 152.5 MB - MD5: 59e52ee52dfc4c9c93fecf12a1d73950 GROMACS simulation files (topologies, index and mdp files) as well as structures of the individual systems studied sorted in 3 categories- solvent systems, cubic systems and hexagonal systems

compositional-coupling-experiment-new.tar.xz

Feb 12, 2025 - Replication Data for: Partitioned Multiphysics Simulation of an Electrophysiological Three-Tendon-Biceps Model

XZ Archive - 91.5 MB -

Setup files and results for section "Compositional Coupling" using OpenDiHu only

dealii-code-and-participants.tar.gz

Feb 12, 2025 - Replication Data for: Partitioned Multiphysics Simulation of an Electrophysiological Three-Tendon-Biceps Model

Gzip Archive - 2.2 MB -

Code, mesh logs and parameter files to run tendons with a deal.II solver. This is needed for experiments in "Compositional coupling" combining OpenDiHu and deal.ii and includes profiling results.

opendihu.tar.gz

Feb 12, 2025 - Replication Data for: Partitioned Multiphysics Simulation of an Electrophysiological Three-Tendon-Biceps Model

Gzip Archive - 1.2 GB -

surface-coupling-experiments.tar.gz

Feb 12, 2025 - Replication Data for: Partitioned Multiphysics Simulation of an Electrophysiological Three-Tendon-Biceps Model

Gzip Archive - 567.6 KB -

Setup and results for the section "Multi coupling of muscle mechanics and three tendon"

volume-coupling-experiments.tar.gz

Feb 12, 2025 - Replication Data for: Partitioned Multiphysics Simulation of an Electrophysiological Three-Tendon-Biceps Model

Gzip Archive - 106.1 MB -

ASTE, setup and coupling meshes used for the section on "Volume coupling of muscle fiber and muscle mechanic"

analysis.tar.gz

Feb 7, 2025 - Supplementary Information to "Molecular determinants of solvent nanoseparation by nanoporous carbon materials"

Gzip Archive - 2.4 MB -

Analysis scripts and jupyter notebooks

itp_files.tar.gz

Feb 7, 2025 - Supplementary Information to "Molecular determinants of solvent nanoseparation by nanoporous carbon materials"

Gzip Archive - 15.3 MB -

itp files common to multiple simulations. For completeness this folder also includes the files martini_v.3.0.0.itp and martini_v3.0.0_solvents.itp from the standard martini repository https://github.com/marrink-lab/martini-forcefields/tree/main/martini_forcefields/regular/v3.0.0/gmx_files Please cite PCT Souza, et al., Nat. Methods, 2021. DOI: 10....

markov_model.tar.gz

Feb 7, 2025 - Supplementary Information to "Molecular determinants of solvent nanoseparation by nanoporous carbon materials"

Gzip Archive - 3.7 MB -

jupyter notebook and input files for the developed markov model describing the first passage times through a cubic material

material_builder.tar.gz

Feb 7, 2025 - Supplementary Information to "Molecular determinants of solvent nanoseparation by nanoporous carbon materials"

Gzip Archive - 15.4 MB -

simulation_files.tar.gz

Feb 7, 2025 - Supplementary Information to "Molecular determinants of solvent nanoseparation by nanoporous carbon materials"

Gzip Archive - 152.5 MB -

GROMACS simulation files (topologies, index and mdp files) as well as structures of the individual systems studied sorted in 3 categories- solvent systems, cubic systems and hexagonal systems

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