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117,521 to 117,530 of 118,051 Results

Reference_alignment_CHITs.stockholm Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database Unknown - 18.2 KB - MD5: 116056d1f562c17e3a2b0ebe8714d0fe Stockholm alignment for the profile hidden Markov model of the chitinase superfamily
Reference_alignment_ELYSs.aln Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database Unknown - 394.5 KB - MD5: b30ebdc0bf4ad0af8b50c15f6339b5e7 Clustal alignment for the profile hidden Markov model of the endolysin superfamily
Reference_alignment_ELYSs.stockholm Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database Unknown - 419.3 KB - MD5: 88e1f79860f29df5626599bd48cfcff3 Stockholm alignment for the profile hidden Markov model of the endolysin superfamily
Seed_sequences.fasta Jun 1, 2020 - Seed sequences for the Glycoside Hydrolase 19 Engineering Database Unknown - 20.3 KB - MD5: 1961bf93199d823fa0fb953e5e120100 FASTA headers comprise (from left to right): number of the seed sequence; sequence identifier (sid) in the GH19ED database; protein identifier (pid) in the GH19ED database; Uniprot or NCBI accession.
CHITs_60_percent_identity_cutoff.graphml Jun 1, 2020 - GraphML files for protein sequence networks of glycoside hydrolase 19 homologues GraphML Network Data - 14.3 MB - MD5: a314980fa659092d23cfda60fb45929a Protein sequence network for the chitinase domains from the Glycoside Hydrolase 19 Engineering Database. The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 60% pairwise sequence identity (edge weights derived from Needleman-Wunsch alignments).
ELYSs_60_percent_identity_cutoff.graphml Jun 1, 2020 - GraphML files for protein sequence networks of glycoside hydrolase 19 homologues GraphML Network Data - 5.6 MB - MD5: f255b9e12d219a65533643ae3b529282 Protein sequence network for the endolysin domains from the Glycoside Hydrolase 19 Engineering Database. The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 60% pairwise sequence identity (edge weights derived from Needleman-Wunsch alignments).
GH19_40_percent_identity_cutoff.graphml Jun 1, 2020 - GraphML files for protein sequence networks of glycoside hydrolase 19 homologues GraphML Network Data - 72.1 MB - MD5: 1ef54be08ab8b4dbe1f5b4a0407fac75 Protein sequence network for representative GH19 domains (corresponding to Pfam’s GH19 profile HMM: PF00182) from the Glycoside Hydrolase 19 Engineering Database. The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 40% pairwise sequence identity (edge weights derived from Needleman-Wunsch alignments).
bat.png May 28, 2020 - Runtime performance measurements of interactive visualisation algorithms PNG Image - 668.2 KB - MD5: a3e7399fe3a20c80bfba9e0c4483cc06 DocumentationExample Sample rendering of the "bat.dat" data set,
bonsai.png May 28, 2020 - Runtime performance measurements of interactive visualisation algorithms PNG Image - 365.6 KB - MD5: 961e874a3ddb5afc0a33bca1c5c4eab4 DocumentationExample Sample rendering of the "bonsai.dat" data set.
bunny.png May 28, 2020 - Runtime performance measurements of interactive visualisation algorithms PNG Image - 416.5 KB - MD5: 47baea9a0693437950b3d0434c63de4e DocumentationExample Sample rendering of the "bunny.dat" data set.

Reference_alignment_CHITs.stockholm

Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database

Unknown - 18.2 KB -

Stockholm alignment for the profile hidden Markov model of the chitinase superfamily

Reference_alignment_ELYSs.aln

Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database

Unknown - 394.5 KB -

Clustal alignment for the profile hidden Markov model of the endolysin superfamily

Reference_alignment_ELYSs.stockholm

Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database

Unknown - 419.3 KB -

Stockholm alignment for the profile hidden Markov model of the endolysin superfamily

Seed_sequences.fasta

Jun 1, 2020 - Seed sequences for the Glycoside Hydrolase 19 Engineering Database

Unknown - 20.3 KB -

FASTA headers comprise (from left to right): number of the seed sequence; sequence identifier (sid) in the GH19ED database; protein identifier (pid) in the GH19ED database; Uniprot or NCBI accession.

CHITs_60_percent_identity_cutoff.graphml

Jun 1, 2020 - GraphML files for protein sequence networks of glycoside hydrolase 19 homologues

GraphML Network Data - 14.3 MB -

Protein sequence network for the chitinase domains from the Glycoside Hydrolase 19 Engineering Database. The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 60% pairwise sequence identity (edge weights derived from Needleman-Wunsch alignments).

ELYSs_60_percent_identity_cutoff.graphml

Jun 1, 2020 - GraphML files for protein sequence networks of glycoside hydrolase 19 homologues

GraphML Network Data - 5.6 MB -

Protein sequence network for the endolysin domains from the Glycoside Hydrolase 19 Engineering Database. The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 60% pairwise sequence identity (edge weights derived from Needleman-Wunsch alignments).

GH19_40_percent_identity_cutoff.graphml

Jun 1, 2020 - GraphML files for protein sequence networks of glycoside hydrolase 19 homologues

GraphML Network Data - 72.1 MB -

Protein sequence network for representative GH19 domains (corresponding to Pfam’s GH19 profile HMM: PF00182) from the Glycoside Hydrolase 19 Engineering Database. The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 40% pairwise sequence identity (edge weights derived from Needleman-Wunsch alignments).

bat.png

May 28, 2020 - Runtime performance measurements of interactive visualisation algorithms

PNG Image - 668.2 KB -

DocumentationExample

Sample rendering of the "bat.dat" data set,

bonsai.png

May 28, 2020 - Runtime performance measurements of interactive visualisation algorithms

PNG Image - 365.6 KB -

DocumentationExample

Sample rendering of the "bonsai.dat" data set.

bunny.png

May 28, 2020 - Runtime performance measurements of interactive visualisation algorithms