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Software Name: Python Funding Information Identifier: 327154368 - SFB 1313

1 to 7 of 7 Results

Molecular simulation scripts for slit nanopores with tunable hydrophilicity Oct 11, 2023 - NMR insights into nanoconfined water using the surface exchange model Gravelle, Simon, 2023, "Molecular simulation scripts for slit nanopores with tunable hydrophilicity", https://doi.org/10.18419/darus-3732, DaRUS, V1 GROMACS molecular simulation input files for slit nanopores filled with liquid water. Initial configuration can be generated using the Python script build_system.py. Use the bash script run_gmx.sh to run GROMACS. See the README.md file.
Scripts for "Assessing the validity of NMR relaxation rates obtained from coarse-grained simulations" Mar 13, 2023 - Holm group Gravelle, Simon; Beyer, David; Brito, Mariano E.; Schlaich, Alexander; Holm, Christian, 2023, "Scripts for "Assessing the validity of NMR relaxation rates obtained from coarse-grained simulations"", https://doi.org/10.18419/darus-3313, DaRUS, V1 Simulations and data analysis scripts for the publication "Assessing the validity of NMR relaxation rates obtained from coarse-grained simulations". The dataset contains two types of simulation scripts: all-atom simulation (GROMACS) and coarse-grained simulations (ESPRESSO). In b...
Molecular simulation scripts for slit nanopores Mar 9, 2023 - NMR investigation of water confined by salt interface Gravelle, Simon; Holm, Christian; Schlaich, Alexander, 2023, "Molecular simulation scripts for slit nanopores", https://doi.org/10.18419/darus-3180, DaRUS, V1 GROMACS molecular simulation input files for slit nanopores made of NaCl and Na2SO4 solid walls, and filled with respectively NaCl and Na2SO4 solutions. Initial configuration with a given salt concentration can be generated using the Python script ConfigurationGenerator.py, and s...
Data for: Measurement Campaign of Gaseous CO2 Concentrations in a Karst Cave with Aqueous Concentrations in a Stagnant Water Column 2021-2022. Feb 13, 2023 - C04: Pore-scale and REV-scale approaches to biological and chemical pore-space alteration in porous media Keim, Leon; Class, Holger; Schirmer, Larissa; Wendel, Kai; Strauch, Bettina; Zimmer, Martin, 2023, "Data for: Measurement Campaign of Gaseous CO2 Concentrations in a Karst Cave with Aqueous Concentrations in a Stagnant Water Column 2021-2022.", https://doi.org/10.18419/darus-3271, DaRUS, V1 This dataset contains data generated during the measurement campaign inside the karst cave. The CO2 sensors in the cave air will continue to measure (as of Feb. 2023). For details on the site etc. see https://doi.org/10.3390/geosciences13020051 To create the graphs in the Class e...
Image enhancement code: time-resolved tomograms of EICP application using 3D U-net Feb 7, 2023 - Publication: Machine learning assists in increasing the time resolution of X-ray tomography Lee, Dongwon; Steeb, Holger, 2023, "Image enhancement code: time-resolved tomograms of EICP application using 3D U-net", https://doi.org/10.18419/darus-2991, DaRUS, V1 This dataset contains the codes to reproduce the results of "Time resolved micro-XRCT dataset of Enzymatically Induced Calcite Precipitation (EICP) in sintered glass bead columns", cf. https://doi.org/10.18419/darus-2227. The code takes "low-dose" images as an input where the ima...
Time resolved micro-XRCT dataset of Enzymatically Induced Calcite Precipitation (EICP) in sintered glass bead columns Feb 7, 2023 - Summerschool2021_4D_EICP Lee, Dongwon; Weinhardt, Felix; Hommel, Johannes; Class, Holger; Steeb, Holger, 2023, "Time resolved micro-XRCT dataset of Enzymatically Induced Calcite Precipitation (EICP) in sintered glass bead columns", https://doi.org/10.18419/darus-2227, DaRUS, V1 The results of EICP (Enzyme Induced Calcite Precipitation) experiments. This dataset includes pressure measurements and 3D reconstructed X-ray images during the conducted experiments. The experiment was performed on two Borosillicates Glass beads Columns (BGC). The images were ta...
Supplementary material for 'Adsorption of Light Gases in Covalent Organic Frameworks: Comparison of Classical Density Functional Theory and Grand Canonical Monte Carlo Simulations' Jul 12, 2021 - Institute of Thermodynamics and Thermal Process Engineering Kessler, Christopher; Eller, Johannes; Gross, Joachim; Hansen, Niels, 2021, "Supplementary material for 'Adsorption of Light Gases in Covalent Organic Frameworks: Comparison of Classical Density Functional Theory and Grand Canonical Monte Carlo Simulations'", https://doi.org/10.18419/darus-1775, DaRUS, V1, UNF:6:kTnkyWKU1qxxwfkXXMvp8w== [fileUNF] This dataset contains results from classical Density Functional Theory (DFT) and Grand Canonical Monte Carlo (GCMC) Simulation. We report excellent agreement between the fluid theoretical approach (DFT), which is a more coarse grained approach and stochastic simulation (GCMC) on...

Molecular simulation scripts for slit nanopores with tunable hydrophilicity

Oct 11, 2023 - NMR insights into nanoconfined water using the surface exchange model

Gravelle, Simon, 2023, "Molecular simulation scripts for slit nanopores with tunable hydrophilicity", https://doi.org/10.18419/darus-3732, DaRUS, V1

GROMACS molecular simulation input files for slit nanopores filled with liquid water. Initial configuration can be generated using the Python script build_system.py. Use the bash script run_gmx.sh to run GROMACS. See the README.md file.

Scripts for "Assessing the validity of NMR relaxation rates obtained from coarse-grained simulations"

Mar 13, 2023 - Holm group

Gravelle, Simon; Beyer, David; Brito, Mariano E.; Schlaich, Alexander; Holm, Christian, 2023, "Scripts for "Assessing the validity of NMR relaxation rates obtained from coarse-grained simulations"", https://doi.org/10.18419/darus-3313, DaRUS, V1

Simulations and data analysis scripts for the publication "Assessing the validity of NMR relaxation rates obtained from coarse-grained simulations". The dataset contains two types of simulation scripts: all-atom simulation (GROMACS) and coarse-grained simulations (ESPRESSO). In b...

Molecular simulation scripts for slit nanopores

Mar 9, 2023 - NMR investigation of water confined by salt interface

Gravelle, Simon; Holm, Christian; Schlaich, Alexander, 2023, "Molecular simulation scripts for slit nanopores", https://doi.org/10.18419/darus-3180, DaRUS, V1

GROMACS molecular simulation input files for slit nanopores made of NaCl and Na2SO4 solid walls, and filled with respectively NaCl and Na2SO4 solutions. Initial configuration with a given salt concentration can be generated using the Python script ConfigurationGenerator.py, and s...

Data for: Measurement Campaign of Gaseous CO2 Concentrations in a Karst Cave with Aqueous Concentrations in a Stagnant Water Column 2021-2022.

Feb 13, 2023 - C04: Pore-scale and REV-scale approaches to biological and chemical pore-space alteration in porous media

Keim, Leon; Class, Holger; Schirmer, Larissa; Wendel, Kai; Strauch, Bettina; Zimmer, Martin, 2023, "Data for: Measurement Campaign of Gaseous CO2 Concentrations in a Karst Cave with Aqueous Concentrations in a Stagnant Water Column 2021-2022.", https://doi.org/10.18419/darus-3271, DaRUS, V1

This dataset contains data generated during the measurement campaign inside the karst cave. The CO2 sensors in the cave air will continue to measure (as of Feb. 2023). For details on the site etc. see https://doi.org/10.3390/geosciences13020051 To create the graphs in the Class e...

Image enhancement code: time-resolved tomograms of EICP application using 3D U-net

Feb 7, 2023 - Publication: Machine learning assists in increasing the time resolution of X-ray tomography

Lee, Dongwon; Steeb, Holger, 2023, "Image enhancement code: time-resolved tomograms of EICP application using 3D U-net", https://doi.org/10.18419/darus-2991, DaRUS, V1

This dataset contains the codes to reproduce the results of "Time resolved micro-XRCT dataset of Enzymatically Induced Calcite Precipitation (EICP) in sintered glass bead columns", cf. https://doi.org/10.18419/darus-2227. The code takes "low-dose" images as an input where the ima...

Time resolved micro-XRCT dataset of Enzymatically Induced Calcite Precipitation (EICP) in sintered glass bead columns

Feb 7, 2023 - Summerschool2021_4D_EICP

Lee, Dongwon; Weinhardt, Felix; Hommel, Johannes; Class, Holger; Steeb, Holger, 2023, "Time resolved micro-XRCT dataset of Enzymatically Induced Calcite Precipitation (EICP) in sintered glass bead columns", https://doi.org/10.18419/darus-2227, DaRUS, V1

The results of EICP (Enzyme Induced Calcite Precipitation) experiments. This dataset includes pressure measurements and 3D reconstructed X-ray images during the conducted experiments. The experiment was performed on two Borosillicates Glass beads Columns (BGC). The images were ta...

Supplementary material for 'Adsorption of Light Gases in Covalent Organic Frameworks: Comparison of Classical Density Functional Theory and Grand Canonical Monte Carlo Simulations'

Jul 12, 2021 - Institute of Thermodynamics and Thermal Process Engineering

Kessler, Christopher; Eller, Johannes; Gross, Joachim; Hansen, Niels, 2021, "Supplementary material for 'Adsorption of Light Gases in Covalent Organic Frameworks: Comparison of Classical Density Functional Theory and Grand Canonical Monte Carlo Simulations'", https://doi.org/10.18419/darus-1775, DaRUS, V1, UNF:6:kTnkyWKU1qxxwfkXXMvp8w== [fileUNF]

This dataset contains results from classical Density Functional Theory (DFT) and Grand Canonical Monte Carlo (GCMC) Simulation. We report excellent agreement between the fluid theoretical approach (DFT), which is a more coarse grained approach and stochastic simulation (GCMC) on...

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