PN 2

SimTech EXC 2075 Project Network 2 "In silico models of coupled biological systems"

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1 to 10 of 14 Results

Replication Code for: Uncertainty Quantification and Propagation in Surrogate-based Bayesian Inference Mar 14, 2024 - PN 2-7 Reiser, Philipp; Aguilar, Javier Enrique; Guthke, Anneli; Bürkner, Paul-Christian, 2024, "Replication Code for: Uncertainty Quantification and Propagation in Surrogate-based Bayesian Inference", https://doi.org/10.18419/darus-4093, DaRUS, V1 This code allows to replicate key experiments from our paper: Uncertainty Quantification and Propagation in Surrogate-based Bayesian Inference. For further details, please refer to the README.md.
Replication Data for: A physiologically enhanced muscle spindle model: using a Hill-type model for extrafusal fibers as template for intrafusal fibers Dec 15, 2023 - PN 2-3B Santana Chacon, Pablo Filipe; Hammer, Maria; Wochner, Isabell; Walter, Johannes R.; Schmitt, Syn, 2023, "Replication Data for: A physiologically enhanced muscle spindle model: using a Hill-type model for extrafusal fibers as template for intrafusal fibers", https://doi.org/10.18419/darus-3796, DaRUS, V1 This code/data allows you reproduce the results of the paper: "A physiologically enhanced muscle spindle model: using a Hill-type model for extrafusal fibers as template for intrafusal fibers" by P. F. S. Chacon, M. Hammer, I. Wochner, J. R. Walter and S. Schmitt. Always cite the...
Neck Reflex Behavior in Driving Simulator Experiments - Academic-Scale Simulator at ITM Jun 21, 2023 - Neck Reflex Behavior in Driving Simulator Experiments Kempter, Fabian; Lantella, Lorena; Stutzig, Norman; Fehr, Jörg; Siebert, Tobias, 2023, "Neck Reflex Behavior in Driving Simulator Experiments - Academic-Scale Simulator at ITM", https://doi.org/10.18419/darus-3000, DaRUS, V1 Neck movement and injury during a car crash is influenced by reflexes, strength, and flexibility. This data set contains in-vivo measurements of neck kinematics and reflexes as participants are rapidly accelerated while driving a mechanically simulated car. This data set includes...
MPC/OC Code for: Learning with Muscles: Benefits for Data-Efficiency and Robustness in Anthropomorphic Tasks Dec 16, 2022 - demoa Wochner, Isabell; Schmitt, Syn, 2022, "MPC/OC Code for: Learning with Muscles: Benefits for Data-Efficiency and Robustness in Anthropomorphic Tasks", https://doi.org/10.18419/darus-3268, DaRUS, V1 This code allows you reproduce the optimal control and model predictive control results of the paper: "Learning with Muscles: Benefits for Data-Efficiency and Robustness in Anthropomorphic Tasks" by Isabell Wochner, Pierre Schumacher, Georg Martius, Dieter Büchler, Syn Schmitt an...
demoa-base: a biophysics simulator for muscle-driven motion Nov 30, 2022 - demoa Schmitt, Syn, 2022, "demoa-base: a biophysics simulator for muscle-driven motion", https://doi.org/10.18419/darus-2550, DaRUS, V4 For more information, such as installation, requirements and user guide, please see the demoa-manual.pdf
gspine: A Human Spine Model Built Using Literature Data Oct 6, 2022 - demoa Hammer, Maria; Riede, Julia Maria; Meszaros-Beller, Laura; Schmitt, Syn, 2022, "gspine: A Human Spine Model Built Using Literature Data", https://doi.org/10.18419/darus-2814, DaRUS, V3 A fully articulating human spine model parametrised using generic literature data for the geometry of the skeleton including attachment points for ligaments and muscles. The model is prepared to run muscle-driven simulation using a simple biological motor control model. The file...
arm26: A Human Arm Model Oct 6, 2022 - demoa Wochner, Isabell; Schmitt, Syn, 2022, "arm26: A Human Arm Model", https://doi.org/10.18419/darus-2871, DaRUS, V2 An arm model parametrised using generic literature data for the geometry of the skeleton including attachment points for ligaments and muscles. This arm26 model consists of a musculoskeletal model of the arm with two degrees of freedom actuated by six muscles. The model is prepar...
allmin: A Reduced Human All-Body Model Oct 6, 2022 - demoa Walter, Johannes R.; Wochner, Isabell; Jacob, Marc; Stollenmaier, Katrin; Lerge, Patrick; Schmitt, Syn, 2022, "allmin: A Reduced Human All-Body Model", https://doi.org/10.18419/darus-2982, DaRUS, V2 A reduced all-body model parametrised using generic literature data for the geometry of the skeleton including attachment points for ligaments and muscles. This allmin model consists of a musculoskeletal model of the human body with 20 degrees of freedom actuated by 36 muscles. T...
Catalysis of L-cysteine by IscS in the presence of IscU Feb 15, 2022 - EnzymeML at work Pinto, Maria Filipa, 2022, "Catalysis of L-cysteine by IscS in the presence of IscU", https://doi.org/10.18419/darus-2483, DaRUS, V1 Measured was the reaction from cysteine to alanine by the Cysteine desulfurase, for six different initial concentrations of cysteine. The data consists of three data points over the course of 2.5 minutes for alanine. Additionally, the concentration of cysteine over time was calcu...
Carboligation of Pyruvate catalysed by HcAHAS C Unit Feb 15, 2022 - EnzymeML at work Malzacher, Stephan, 2022, "Carboligation of Pyruvate catalysed by HcAHAS C Unit", https://doi.org/10.18419/darus-2470, DaRUS, V1 The data was measured in the course of a Bachelor thesis and filled into the EnzymeML Spreadsheet. Measured was the absorption for the reaction from pyruvate to acetolactate. The measurements were conducted for six different pH values (in the range from pH 5 to pH8). For each of...

Replication Code for: Uncertainty Quantification and Propagation in Surrogate-based Bayesian Inference

Mar 14, 2024 - PN 2-7

Reiser, Philipp; Aguilar, Javier Enrique; Guthke, Anneli; Bürkner, Paul-Christian, 2024, "Replication Code for: Uncertainty Quantification and Propagation in Surrogate-based Bayesian Inference", https://doi.org/10.18419/darus-4093, DaRUS, V1

This code allows to replicate key experiments from our paper: Uncertainty Quantification and Propagation in Surrogate-based Bayesian Inference. For further details, please refer to the README.md.

Replication Data for: A physiologically enhanced muscle spindle model: using a Hill-type model for extrafusal fibers as template for intrafusal fibers

Dec 15, 2023 - PN 2-3B

Santana Chacon, Pablo Filipe; Hammer, Maria; Wochner, Isabell; Walter, Johannes R.; Schmitt, Syn, 2023, "Replication Data for: A physiologically enhanced muscle spindle model: using a Hill-type model for extrafusal fibers as template for intrafusal fibers", https://doi.org/10.18419/darus-3796, DaRUS, V1

This code/data allows you reproduce the results of the paper: "A physiologically enhanced muscle spindle model: using a Hill-type model for extrafusal fibers as template for intrafusal fibers" by P. F. S. Chacon, M. Hammer, I. Wochner, J. R. Walter and S. Schmitt. Always cite the...

Neck Reflex Behavior in Driving Simulator Experiments - Academic-Scale Simulator at ITM

Jun 21, 2023 - Neck Reflex Behavior in Driving Simulator Experiments

Kempter, Fabian; Lantella, Lorena; Stutzig, Norman; Fehr, Jörg; Siebert, Tobias, 2023, "Neck Reflex Behavior in Driving Simulator Experiments - Academic-Scale Simulator at ITM", https://doi.org/10.18419/darus-3000, DaRUS, V1

Neck movement and injury during a car crash is influenced by reflexes, strength, and flexibility. This data set contains in-vivo measurements of neck kinematics and reflexes as participants are rapidly accelerated while driving a mechanically simulated car. This data set includes...

MPC/OC Code for: Learning with Muscles: Benefits for Data-Efficiency and Robustness in Anthropomorphic Tasks

Dec 16, 2022 - demoa

Wochner, Isabell; Schmitt, Syn, 2022, "MPC/OC Code for: Learning with Muscles: Benefits for Data-Efficiency and Robustness in Anthropomorphic Tasks", https://doi.org/10.18419/darus-3268, DaRUS, V1

This code allows you reproduce the optimal control and model predictive control results of the paper: "Learning with Muscles: Benefits for Data-Efficiency and Robustness in Anthropomorphic Tasks" by Isabell Wochner, Pierre Schumacher, Georg Martius, Dieter Büchler, Syn Schmitt an...

demoa-base: a biophysics simulator for muscle-driven motion

Nov 30, 2022 - demoa

Schmitt, Syn, 2022, "demoa-base: a biophysics simulator for muscle-driven motion", https://doi.org/10.18419/darus-2550, DaRUS, V4

For more information, such as installation, requirements and user guide, please see the demoa-manual.pdf

gspine: A Human Spine Model Built Using Literature Data

Oct 6, 2022 - demoa

Hammer, Maria; Riede, Julia Maria; Meszaros-Beller, Laura; Schmitt, Syn, 2022, "gspine: A Human Spine Model Built Using Literature Data", https://doi.org/10.18419/darus-2814, DaRUS, V3

A fully articulating human spine model parametrised using generic literature data for the geometry of the skeleton including attachment points for ligaments and muscles. The model is prepared to run muscle-driven simulation using a simple biological motor control model. The file...

arm26: A Human Arm Model

Oct 6, 2022 - demoa

Wochner, Isabell; Schmitt, Syn, 2022, "arm26: A Human Arm Model", https://doi.org/10.18419/darus-2871, DaRUS, V2

An arm model parametrised using generic literature data for the geometry of the skeleton including attachment points for ligaments and muscles. This arm26 model consists of a musculoskeletal model of the arm with two degrees of freedom actuated by six muscles. The model is prepar...

allmin: A Reduced Human All-Body Model

Oct 6, 2022 - demoa

Walter, Johannes R.; Wochner, Isabell; Jacob, Marc; Stollenmaier, Katrin; Lerge, Patrick; Schmitt, Syn, 2022, "allmin: A Reduced Human All-Body Model", https://doi.org/10.18419/darus-2982, DaRUS, V2

A reduced all-body model parametrised using generic literature data for the geometry of the skeleton including attachment points for ligaments and muscles. This allmin model consists of a musculoskeletal model of the human body with 20 degrees of freedom actuated by 36 muscles. T...

Catalysis of L-cysteine by IscS in the presence of IscU

Feb 15, 2022 - EnzymeML at work

Pinto, Maria Filipa, 2022, "Catalysis of L-cysteine by IscS in the presence of IscU", https://doi.org/10.18419/darus-2483, DaRUS, V1

Measured was the reaction from cysteine to alanine by the Cysteine desulfurase, for six different initial concentrations of cysteine. The data consists of three data points over the course of 2.5 minutes for alanine. Additionally, the concentration of cysteine over time was calcu...

Carboligation of Pyruvate catalysed by HcAHAS C Unit

Feb 15, 2022 - EnzymeML at work

Malzacher, Stephan, 2022, "Carboligation of Pyruvate catalysed by HcAHAS C Unit", https://doi.org/10.18419/darus-2470, DaRUS, V1

The data was measured in the course of a Bachelor thesis and filled into the EnzymeML Spreadsheet. Measured was the absorption for the reaction from pyruvate to acetolactate. The measurements were conducted for six different pH values (in the range from pH 5 to pH8). For each of...

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