Department of Technical Biochemistry

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1 to 10 of 56 Results

PET_local_08_55sim.graphml Dec 1, 2021 - GraphML files for sequence networks of PETases and PURases GraphML Network Data - 5.8 MB - MD5: abddf6c05feb40d68c3c5cbed3f21d2b Protein sequence network for PETase homologues. Edges were selected at a threshold of 55% pairwise sequence identity.
Sfam11_09_60sim.graphml Dec 1, 2021 - GraphML files for sequence networks of PETases and PURases GraphML Network Data - 557.2 KB - MD5: 7cd626f025e5d7a0a253281649894b7f Protein sequence network for PURase homologues from LED superfamily 11. Edges were selected at a threshold of 60% pairwise sequence identity.
Sfam13_09_60sim.graphml Dec 1, 2021 - GraphML files for sequence networks of PETases and PURases GraphML Network Data - 16.2 KB - MD5: e93342540254b2c25b2826343947b22b Protein sequence network for PURase homologues from LED superfamily 13. Edges were selected at a threshold of 60% pairwise sequence identity.
PET_09_tcoffee.aln Dec 1, 2021 - Profile hidden Markov model for PETase homologues Unknown - 7.2 KB - MD5: e81a1a25f3e79e189a048e1a04756cbc Multiple sequence alignment in Clustal format.
PET_09_tcoffee.hmm Dec 1, 2021 - Profile hidden Markov model for PETase homologues Unknown - 122.2 KB - MD5: 7fa623dde96d25f2919f75b497b2f657 Profile hidden Markov model in HMMER3 format
PET_09_tcoffee.sto Dec 1, 2021 - Profile hidden Markov model for PETase homologues Unknown - 6.1 KB - MD5: 7e6f4be4289d0fb3371ac4e777be14e9 Multiple sequence alignment in Stockholm format with reference columns: The trimmed alignment region is marked by an 'x' in lines starting with #=GC RF
Templates.tab Dec 1, 2021 - Profile hidden Markov model for PETase homologues Tabular Data - 255 B - 3 Variables, 12 Observations - UNF:6:AEjnqfOrnimO5Q2xFDkQDw== Uniprot identifiers, PDB identifiers, and PDB chains used for the structure-guided multiple sequence alignment by T-COFFEE
GH19ED.tab May 20, 2021 - Sequence cross-references and taxonomic lineage for glycoside hydrolase family 19 Tabular Data - 5.0 MB - 9 Variables, 22461 Observations - UNF:6:zi8TRxkq1C/pCN14pXTA0Q==
AS.aln May 12, 2021 - Consensus sequences of arylsulfatases and phosphonate monoester hydrolases Unknown - 72.6 KB - MD5: f61c99b2a140570ea632e7cf082d8def Multiple sequence alignment in Clustal format for 95 homologues of arylsulfatases
AS-consensus.fasta May 12, 2021 - Consensus sequences of arylsulfatases and phosphonate monoester hydrolases Unknown - 570 B - MD5: 4f58daa6a2c326c5c78d7865df3fa249 FASTA file containing the consensus protein sequence of arylsulfatases based on the profile hidden Markov model in AS.hmm

PET_local_08_55sim.graphml

Dec 1, 2021 - GraphML files for sequence networks of PETases and PURases

GraphML Network Data - 5.8 MB -

Protein sequence network for PETase homologues. Edges were selected at a threshold of 55% pairwise sequence identity.

Sfam11_09_60sim.graphml

Dec 1, 2021 - GraphML files for sequence networks of PETases and PURases

GraphML Network Data - 557.2 KB -

Protein sequence network for PURase homologues from LED superfamily 11. Edges were selected at a threshold of 60% pairwise sequence identity.

Sfam13_09_60sim.graphml

Dec 1, 2021 - GraphML files for sequence networks of PETases and PURases

GraphML Network Data - 16.2 KB -

Protein sequence network for PURase homologues from LED superfamily 13. Edges were selected at a threshold of 60% pairwise sequence identity.

PET_09_tcoffee.aln

Dec 1, 2021 - Profile hidden Markov model for PETase homologues

Unknown - 7.2 KB -

Multiple sequence alignment in Clustal format.

PET_09_tcoffee.hmm

Dec 1, 2021 - Profile hidden Markov model for PETase homologues

Unknown - 122.2 KB -

Profile hidden Markov model in HMMER3 format

PET_09_tcoffee.sto

Dec 1, 2021 - Profile hidden Markov model for PETase homologues

Unknown - 6.1 KB -

Multiple sequence alignment in Stockholm format with reference columns: The trimmed alignment region is marked by an 'x' in lines starting with #=GC RF

Templates.tab

Dec 1, 2021 - Profile hidden Markov model for PETase homologues

Tabular Data - 255 B - 3 Variables, 12 Observations -

Uniprot identifiers, PDB identifiers, and PDB chains used for the structure-guided multiple sequence alignment by T-COFFEE

GH19ED.tab

May 20, 2021 - Sequence cross-references and taxonomic lineage for glycoside hydrolase family 19

Tabular Data - 5.0 MB - 9 Variables, 22461 Observations -

AS.aln

May 12, 2021 - Consensus sequences of arylsulfatases and phosphonate monoester hydrolases

Unknown - 72.6 KB -

Multiple sequence alignment in Clustal format for 95 homologues of arylsulfatases

AS-consensus.fasta

May 12, 2021 - Consensus sequences of arylsulfatases and phosphonate monoester hydrolases

Unknown - 570 B -

FASTA file containing the consensus protein sequence of arylsulfatases based on the profile hidden Markov model in AS.hmm

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