Glycoside Hydrolase 19 Engineering Database

Supporting information and original files for bioinformatic investigations using the Glycoside Hydrolase 19 Engineering Database (https://gh19ed.biocatnet.de/)

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1 to 10 of 11 Results

GH19ED.tab May 20, 2021 - Sequence cross-references and taxonomic lineage for glycoside hydrolase family 19 Tabular Data - 5.0 MB - 9 Variables, 22461 Observations - UNF:6:zi8TRxkq1C/pCN14pXTA0Q==
CHITs.hmm Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database Unknown - 110.9 KB - MD5: 9c4c77ebc1b7f7a3c4c4f9bf713aa7fe Profile hidden Markov model in HMMER format for the chitinase superfamily
ELYSs.hmm Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database Unknown - 81.4 KB - MD5: 61d6a4adfde821f447d18458a00e7667 Profile hidden Markov model in HMMER format for the endolysin superfamily
Reference_alignment_CHITs.aln Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database Unknown - 15.9 KB - MD5: 1de23a931f1988e2e26fa21ca210605c Clustal alignment for the profile hidden Markov model of the chitinase superfamily
Reference_alignment_CHITs.stockholm Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database Unknown - 18.2 KB - MD5: 116056d1f562c17e3a2b0ebe8714d0fe Stockholm alignment for the profile hidden Markov model of the chitinase superfamily
Reference_alignment_ELYSs.aln Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database Unknown - 394.5 KB - MD5: b30ebdc0bf4ad0af8b50c15f6339b5e7 Clustal alignment for the profile hidden Markov model of the endolysin superfamily
Reference_alignment_ELYSs.stockholm Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database Unknown - 419.3 KB - MD5: 88e1f79860f29df5626599bd48cfcff3 Stockholm alignment for the profile hidden Markov model of the endolysin superfamily
Seed_sequences.fasta Jun 1, 2020 - Seed sequences for the Glycoside Hydrolase 19 Engineering Database Unknown - 20.3 KB - MD5: 1961bf93199d823fa0fb953e5e120100 FASTA headers comprise (from left to right): number of the seed sequence; sequence identifier (sid) in the GH19ED database; protein identifier (pid) in the GH19ED database; Uniprot or NCBI accession.
CHITs_60_percent_identity_cutoff.graphml Jun 1, 2020 - GraphML files for protein sequence networks of glycoside hydrolase 19 homologues GraphML Network Data - 14.3 MB - MD5: a314980fa659092d23cfda60fb45929a Protein sequence network for the chitinase domains from the Glycoside Hydrolase 19 Engineering Database. The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 60% pairwise sequence identity (edge weights derived from Needleman-Wunsch...
ELYSs_60_percent_identity_cutoff.graphml Jun 1, 2020 - GraphML files for protein sequence networks of glycoside hydrolase 19 homologues GraphML Network Data - 5.6 MB - MD5: f255b9e12d219a65533643ae3b529282 Protein sequence network for the endolysin domains from the Glycoside Hydrolase 19 Engineering Database. The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 60% pairwise sequence identity (edge weights derived from Needleman-Wunsch...

GH19ED.tab

May 20, 2021 - Sequence cross-references and taxonomic lineage for glycoside hydrolase family 19

Tabular Data - 5.0 MB - 9 Variables, 22461 Observations -

CHITs.hmm

Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database

Unknown - 110.9 KB -

Profile hidden Markov model in HMMER format for the chitinase superfamily

ELYSs.hmm

Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database

Unknown - 81.4 KB -

Profile hidden Markov model in HMMER format for the endolysin superfamily

Reference_alignment_CHITs.aln

Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database

Unknown - 15.9 KB -

Clustal alignment for the profile hidden Markov model of the chitinase superfamily

Reference_alignment_CHITs.stockholm

Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database

Unknown - 18.2 KB -

Stockholm alignment for the profile hidden Markov model of the chitinase superfamily

Reference_alignment_ELYSs.aln

Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database

Unknown - 394.5 KB -

Clustal alignment for the profile hidden Markov model of the endolysin superfamily

Reference_alignment_ELYSs.stockholm

Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database

Unknown - 419.3 KB -

Stockholm alignment for the profile hidden Markov model of the endolysin superfamily

Seed_sequences.fasta

Jun 1, 2020 - Seed sequences for the Glycoside Hydrolase 19 Engineering Database

Unknown - 20.3 KB -

FASTA headers comprise (from left to right): number of the seed sequence; sequence identifier (sid) in the GH19ED database; protein identifier (pid) in the GH19ED database; Uniprot or NCBI accession.

CHITs_60_percent_identity_cutoff.graphml

Jun 1, 2020 - GraphML files for protein sequence networks of glycoside hydrolase 19 homologues

GraphML Network Data - 14.3 MB -

Protein sequence network for the chitinase domains from the Glycoside Hydrolase 19 Engineering Database. The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 60% pairwise sequence identity (edge weights derived from Needleman-Wunsch...

ELYSs_60_percent_identity_cutoff.graphml

Jun 1, 2020 - GraphML files for protein sequence networks of glycoside hydrolase 19 homologues

GraphML Network Data - 5.6 MB -

Protein sequence network for the endolysin domains from the Glycoside Hydrolase 19 Engineering Database. The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 60% pairwise sequence identity (edge weights derived from Needleman-Wunsch...

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