Supplementary datasets for the publication "EnzymeML at work".
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Catalysis of L-cysteine by IscS in the presence of IscU
Feb 15, 2022
Pinto, Maria Filipa, 2022, "Catalysis of L-cysteine by IscS in the presence of IscU", https://doi.org/10.18419/darus-2483, DaRUS, V1
Measured was the reaction from cysteine to alanine by the Cysteine desulfurase, for six different initial concentrations of cysteine. The data consists of three data points over the course of 2.5 minutes for alanine. Additionally, the concentration of cysteine over time was calcu...
AnalysingInitialRateDataUsingMichaelisMentenKineticsinterferENZY.ipynb
Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU
Jupyter Notebook - 48.9 KB - MD5: f35f461622c4204a4e279458bccd14ce
Used to generate an InterferEnzy file from an OMEX EnzymeML archive, which was the sent to the modeling platform to estimate the parameters.
AnalysingInitialRateDataUsingMichaelisMentenKineticsJupyterNotebook.ipynb
Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU
Jupyter Notebook - 55.2 KB - MD5: 12615450c9a703b35f21a3e9af6f2a4f
Used to model the given OMEX EnzymeML archive using the Python package lmfit.
Desulfuration_Cysteine_Pinto_input_interferENZY.txt
Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU
Plain Text - 370 B - MD5: 679c41f97de6f72684385e95865cb715
Text file that is used as input for InterferEnzy
Desulfuration_Cysteine_Pinto.omex
Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU
Unknown - 6.5 KB - MD5: ef8907a79459d27a988be27c5a245a4c
OMEX EnzymeML archive that was generated from the data using the given spreadsheet.
model.svg
Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU
SVG Image - 28.3 KB - MD5: 3ff59052e8cd130c94196463b502bc52
Pinto_Measurements_(modelled_by_interferENZY)_Modelled.omex
Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU
Unknown - 4.7 KB - MD5: 86de620b33ede45a6d5916645f8bdcb2
Resulting OMEX EnzymeML archive from the given Jupyter Notebook
Pinto_Measurements_(modelled_by_Jupyter_Notebook).omex
Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU
Plain Text - 6.3 KB - MD5: a22e793853379e926175f49e4418ddc9
Pinto_output_interferENZY.txt
Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU
Plain Text - 1.1 KB - MD5: 2dc41dd905e94884a80189042825c393
Output that was given by InterferEnzy
time-course.svg
Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU
SVG Image - 26.4 KB - MD5: 0d5b69a1752269e35a6f6cf1b70a635a
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