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126,831 to 126,840 of 127,423 Results
B04: Hybrid discrete-continuum models for fractured porous media: model choice and random field/network generation(Universität Stuttgart)
B04: Hybrid discrete-continuum models for fractured porous media: model choice and random field/network generation logo
Apr 22, 2020SFB 1313 "Interface-Driven Multi-Field Processes in Porous Media"
Fractured porous media are geometrically very complex. There are many competing model concepts to represent their structure in flow simulations; these models differ drastically in their level of geo¬metric detail and in their level of simplification and abstraction. Systematically choosing between these vastly different models, calibrating chosen m...
Conserved positions in expansin homologues
Apr 9, 2020 - Expansin Engineering Database
Lohoff, Caroline, 2020, "Conserved positions in expansin homologues", https://doi.org/10.18419/DARUS-735, DaRUS, V1, UNF:6:HemykMznkJ0tyrf89mswkg== [fileUNF]
Conserved positions in the N- and C-terminal expansin domains of different groups from the Expansin Engineering Database (occurring in at least 70% of the annotated sequence entries). The expansin domains were annotated using hmmscan (from the HMMER software suite) against all sequence entries in the Expansin Engineering Database.
Conserved_amino_acids_in_C-terminal_domain.tab
Apr 9, 2020 - Conserved positions in expansin homologues
Tabular Data - 7.3 KB - 8 Variables, 85 Observations - UNF:6:CE90w0ai1+p+rVxLddj0OA==
Conserved positions in the C-terminal expansin domain with standard numbering according to PDB entry 4FER (Bacillus subtilis EXLX1, first column). The amino acids and their occurrence in % are given for different groups of sequences: (Bacteria (column 2), Fungi (column 3), EXPA (Expansin A, column 4), EXPB (Expansin B, column 5), EXLA (Expansin-lik...
Conserved_amino_acids_in_N-terminal_domain.tab
Apr 9, 2020 - Conserved positions in expansin homologues
Tabular Data - 9.8 KB - 8 Variables, 123 Observations - UNF:6:ztPrC1aaxgvhz6A2pKE7oA==
Conserved positions in the N-terminal expansin domain with standard numbering according to PDB entry 4FER (Bacillus subtilis EXLX1, first column). The amino acids and their occurrence in % are given for different groups of sequences: (Bacteria (column 2), Fungi (column 3), EXPA (Expansin A, column 4), EXPB (Expansin B, column 5), EXLA (Expansin-lik...
Expansin homologues in actinobacterial genomes from South Africa
Apr 9, 2020 - Expansin Engineering Database
Buchholz, Patrick C. F., 2020, "Expansin homologues in actinobacterial genomes from South Africa", https://doi.org/10.18419/DARUS-699, DaRUS, V1
Hit sequences for putative expansins (or expansin domains) are reported from an exemplary genome screening. Five actinobacterial genomes were selected to show the application of the Expansin Engineering Database (ExED) for the identification of expansin domains. The original nucleic acid sequences were translated by the standard codon usage table i...
hits_aa.fasta
Apr 9, 2020 - Expansin homologues in actinobacterial genomes from South Africa
Unknown - 1.3 KB - MD5: 00f8e0957e042214a2c935343fae28f9
FASTA file of protein sequences (amino acid symbols). The numbers in the headers correspond to the hits mentioned in the Supporting Information file from Lohoff et al. 2020.
hits_nt.fasta
Apr 9, 2020 - Expansin homologues in actinobacterial genomes from South Africa
Unknown - 4.0 KB - MD5: 7dbd7e182fdf07bf4bd300fbd68ed0a4
FASTA file of nucleic acid sequences. The numbers in the headers correspond to the hits mentioned in the Supporting Information file from Lohoff et al. 2020.
Occurrence of expansins in the tree of life
Apr 9, 2020 - Expansin Engineering Database
Lohoff, Caroline, 2020, "Occurrence of expansins in the tree of life", https://doi.org/10.18419/DARUS-693, DaRUS, V1, UNF:6:eK0oQia4QiaiEO0m1BJFeA== [fileUNF]
Comparison between expansins found in the Expansin Engineering Database (ExED) and literature.
Taxonomic_analysis.tab
Apr 9, 2020 - Occurrence of expansins in the tree of life
Tabular Data - 4.0 KB - 6 Variables, 90 Observations - UNF:6:eK0oQia4QiaiEO0m1BJFeA==
Tabular comparison between the occurrences of expansins in different taxa as reported in the Expansin Engineering Database (ExED) and Chase et al. (2020): Name of the taxonomic superkingdom; Name of the (major) taxonomic group reported in Chase et al. 2020; Lineage contains expansin genes after Chase et al. 2020 (Yes or No); Lineage contains ex...
GLASSgo Setup & Usage
Apr 6, 2020 - Tutorials & Manuals
Schäfer, Richard A.; Lott, Steffen C.; Georg, Jens; Grüning, Björn; Hess, Wolfgang; Voß, Björn, 2020, "GLASSgo Setup & Usage", https://doi.org/10.18419/DARUS-517, DaRUS, V2
Instruction video to install and use GLASSgo on multiple resources (e.g., Docker, Galaxy, web server). GLASSgo is available at Github with instructions and application data and is distributed under the MIT license. Furthermore, GLASSgo can applied using the RNA Workbench Server or the GLASSgo Web Server
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