{"dcterms:modified":"2023-12-08","dcterms:creator":"DaRUS","@type":"ore:ResourceMap","@id":"https://nfldevdataverse2.rus.uni-stuttgart.de/api/datasets/export?exporter=OAI_ORE&persistentId=https://doi.org/10.18419/darus-1163","ore:describes":{"citation:keyword":[{"citation:keywordValue":"protein sequence","citation:keywordVocabulary":"EDAM","citation:keywordVocabularyURI":"http://edamontology.org/data_2976"},{"citation:keywordValue":"protein structure","citation:keywordVocabulary":"EDAM","citation:keywordVocabularyURI":"http://edamontology.org/data_1460"},{"citation:keywordValue":"taxonomy","citation:keywordVocabulary":"EDAM","citation:keywordVocabularyURI":"http://edamontology.org/data_3028"},{"citation:keywordValue":"lineage"},{"citation:keywordValue":"source organism"},{"citation:keywordValue":"amino acid sequence","citation:keywordVocabulary":"NCIT","citation:keywordVocabularyURI":"http://purl.obolibrary.org/obo/NCIT_C13187"}],"citation:datasetContact":{"citation:datasetContactName":"Pleiss, Jürgen","citation:datasetContactAffiliation":"Universität Stuttgart"},"publication":{"publicationCitation":"Orlando M., Buchholz P. C. F., Lotti M. & Pleiss J. (2020). The GH19 Engineering Database: an extended classification system for exploring the properties of sequence space and protein evolution. (submitted)"},"author":{"citation:authorName":"Buchholz, Patrick C. F.","citation:authorAffiliation":"Universität Stuttgart","authorIdentifierScheme":"ORCID","authorIdentifier":"0000-0001-5967-3777"},"citation:dsDescription":{"citation:dsDescriptionValue":"The Glycoside Hydrolase 19 Engineering Database (GH19ED) contains information on protein sequences and structures of glycoside hydrolases from family 19. This dataset lists cross-references to the National Center for Biotechnology Information (NCBI), cross-references to the Protein Data Bank (PDB) and the taxonomic lineage for each sequence entry in the GH19ED."},"language":"English","dateOfDeposit":"2020-11-30","citation:depositor":"Buchholz, Patrick C. F.","subject":"Medicine, Health and Life Sciences","citation:notesText":"The tab-separated tabular file comprises nine columns:
\r\n(1) the sequence identifier from the GH19ED, integer (Sequence_id),
\r\n(2) the protein sequence accessions from the NCBI, semicolon-separated (NCBI_accessions),
\r\n(3) the PDB accessions, semicolon-separated (PDB_accessions),
\r\n(4) the name of the source or source organism (Source_name),
\r\n(5) the NCBI taxonomy identifier for the source (NCBI_taxonomy_id),
\r\n(6) the taxonomic lineage from the lowest to the highest rank, as inferred from NCBI taxonomy (Lineage),
\r\n(7) the \"protein\" identifier from the GH19ED, integer (Protein_id),
\r\n(8) the \"homologous family\" (or group) identifier from the GH19ED, integer (Homologous_family_id),
\r\n(9) the \"superfamily\" (or subfamily) identifier from the GH19ED, integer (Superfamily_id). For sequence entries assigned to more than one source organism name, only the first taxonomic lineage found in the GH19ED is listed.","title":"Sequence cross-references and taxonomic lineage for glycoside hydrolase family 19","citation:project":[{"citation:projectName":"Bundesministerium für Bildung und Forschung: 031B0571A"},{"citation:projectName":"Deutsche Forschungsgemeinschaft: EXC2075"}],"dataSources":["https://gh19ed.biocatnet.de/","https://www.ncbi.nlm.nih.gov/protein","https://www.rcsb.org/","https://www.ncbi.nlm.nih.gov/taxonomy"],"@id":"https://doi.org/10.18419/darus-1163","@type":["ore:Aggregation","schema:Dataset"],"schema:version":"1.0","schema:name":"Sequence cross-references and taxonomic lineage for glycoside hydrolase family 19","schema:dateModified":"Thu May 20 09:06:42 CEST 2021","schema:datePublished":"2021-05-20","schema:license":"http://creativecommons.org/licenses/by/4.0","dvcore:fileTermsOfAccess":{"dvcore:fileRequestAccess":false},"schema:includedInDataCatalog":"DaRUS","schema:isPartOf":{"schema:name":"Glycoside Hydrolase 19 Engineering Database","@id":"https://nfldevdataverse2.rus.uni-stuttgart.de/dataverse/ibtb_GH19ED","schema:description":"Supporting information and original files for bioinformatic investigations using the Glycoside Hydrolase 19 Engineering Database (https://gh19ed.biocatnet.de/)","schema:isPartOf":{"schema:name":"Bioinformatics","@id":"https://nfldevdataverse2.rus.uni-stuttgart.de/dataverse/ibtb_BI","schema:isPartOf":{"schema:name":"Department of Technical Biochemistry","@id":"https://nfldevdataverse2.rus.uni-stuttgart.de/dataverse/ibtb_TB","schema:isPartOf":{"schema:name":"Institute of Biochemistry and Technical Biochemistry","@id":"https://nfldevdataverse2.rus.uni-stuttgart.de/dataverse/ibtb","schema:isPartOf":{"schema:name":"DaRUS","@id":"https://nfldevdataverse2.rus.uni-stuttgart.de/dataverse/darus","schema:description":"This is the data Repository of the University of Stuttgart."}}}}},"ore:aggregates":[{"schema:name":"GH19ED.tsv","dvcore:restricted":false,"schema:version":3,"dvcore:datasetVersionId":742,"@id":"doi:10.18419/darus-1163/1","schema:sameAs":"https://nfldevdataverse2.rus.uni-stuttgart.de/api/access/datafile/:persistentId?persistentId=doi:10.18419/darus-1163/1&format=original","@type":"ore:AggregatedResource","schema:fileFormat":"text/tsv","dvcore:filesize":5060317,"dvcore:storageIdentifier":"s3://fokus-dv-prod-1:17619942dac-ebf33733d8da","dvcore:currentIngestedName":"GH19ED.tab","dvcore:UNF":"UNF:6:zi8TRxkq1C/pCN14pXTA0Q==","dvcore:rootDataFileId":-1,"dvcore:checksum":{"@type":"MD5","@value":"d8ca2043f7a4ab25792322c82037a74e"}}],"schema:hasPart":["doi:10.18419/darus-1163/1"]},"@context":{"author":"http://purl.org/dc/terms/creator","authorIdentifier":"http://purl.org/spar/datacite/AgentIdentifier","authorIdentifierScheme":"http://purl.org/spar/datacite/AgentIdentifierScheme","citation":"https://dataverse.org/schema/citation/","dataSources":"https://www.w3.org/TR/prov-o/#wasDerivedFrom","dateOfDeposit":"http://purl.org/dc/terms/dateSubmitted","dcterms":"http://purl.org/dc/terms/","dvcore":"https://dataverse.org/schema/core#","language":"http://purl.org/dc/terms/language","ore":"http://www.openarchives.org/ore/terms/","publication":"http://purl.org/dc/terms/isReferencedBy","publicationCitation":"http://purl.org/dc/terms/bibliographicCitation","schema":"http://schema.org/","subject":"http://purl.org/dc/terms/subject","title":"http://purl.org/dc/terms/title"}}