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Part 1: Document Description
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Citation |
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Title: |
Python scripts related to MD simulations in "Preferential interaction of DNMT3A subunits containing the R882H cancer mutation leads to dominant changes of flanking sequence effects" |
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Identification Number: |
doi:10.18419/darus-2463 |
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Distributor: |
DaRUS |
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Date of Distribution: |
2022-02-01 |
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Version: |
1 |
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Bibliographic Citation: |
Jeltsch, Albert; Schnee, Philipp; Pleiss, Jürgen, 2022, "Python scripts related to MD simulations in "Preferential interaction of DNMT3A subunits containing the R882H cancer mutation leads to dominant changes of flanking sequence effects"", https://doi.org/10.18419/darus-2463, DaRUS, V1 |
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Citation |
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Title: |
Python scripts related to MD simulations in "Preferential interaction of DNMT3A subunits containing the R882H cancer mutation leads to dominant changes of flanking sequence effects" |
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Identification Number: |
doi:10.18419/darus-2463 |
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Authoring Entity: |
Jeltsch, Albert (Universität Stuttgart) |
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Schnee, Philipp (Universität Stuttgart) |
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Pleiss, Jürgen (Universität Stuttgart) |
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Date of Production: |
2022-01-01 |
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Software used in Production: |
MDTraj |
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Software used in Production: |
contact-map-explorer |
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Software used in Production: |
OpenMM |
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Software used in Production: |
AmberTools |
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Software used in Production: |
Python |
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Grant Number: |
EXC 2075 390740016 |
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Distributor: |
DaRUS |
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Access Authority: |
Jeltsch, Albert |
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Depositor: |
Jeltsch, Albert |
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Date of Deposit: |
2022-01-26 |
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Holdings Information: |
https://doi.org/10.18419/darus-2463 |
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Study Scope |
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Keywords: |
Computer and Information Science, Medicine, Health and Life Sciences, Molecular Dynamics Simulation, OpenMM, Python Scripts, MDTraj Analysis, DNA Methylation, DNMT3A |
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Abstract: |
Python scripts used for the Molecular Dynamics Simulation presented in "Preferential interaction of DNMT3A subunits containing the R882H cancer mutation leads to dominant changes of flanking sequence effects" |
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Kind of Data: |
Python Scripts |
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Methodology and Processing |
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Sources Statement |
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Data Access |
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Other Study Description Materials |
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Related Studies |
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Jeltsch, Albert; Bashtrykov, Pavel; Adam, Sabrina; Mack, Alexandra; Emperle, Max: Data related to Preferential interaction of DNMT3A subunits containing the R882H cancer mutation leads to dominant changes of flanking sequence effects. <a href="https://doi.org/10.18419/darus-2231">doi: 10.18419/darus-2231</a> |
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Related Publications |
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Citation |
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Title: |
Alexandra Mack, Max Emperle, Philipp Schnee, Sabrina Adam, Jürgen Pleiss, Pavel Bashtrykov, & Albert Jeltsch: Preferential interaction of DNMT3A subunits containing the R882H cancer mutation leads to dominant changes of flanking sequence effects. Submitted for publication |
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Bibliographic Citation: |
Alexandra Mack, Max Emperle, Philipp Schnee, Sabrina Adam, Jürgen Pleiss, Pavel Bashtrykov, & Albert Jeltsch: Preferential interaction of DNMT3A subunits containing the R882H cancer mutation leads to dominant changes of flanking sequence effects. Submitted for publication |
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Label: |
DNMT3A-Contact_Maps.py |
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Text: |
Python script for calculation of contact maps |
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Notes: |
text/x-python |
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Label: |
DNMT3A-Contact_Maps_Analysis.py |
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Text: |
Python script for analysis of contact maps |
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Notes: |
text/x-python |
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Label: |
DNMT3A-Contact_Maps_Statistics.py |
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Text: |
Python script for calculation of contact maps |
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Notes: |
text/x-python |
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Label: |
DNMT3A-Production.py |
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Text: |
Pyton script for calculation of contact maps |
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Notes: |
text/x-python |