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Part 1: Document Description
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Citation |
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Title: |
Query sequences for the update of the ExED |
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Identification Number: |
doi:10.18419/darus-622 |
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Distributor: |
DaRUS |
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Date of Distribution: |
2020-01-30 |
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Version: |
1 |
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Bibliographic Citation: |
Lohoff, Caroline; Buchholz, Patrick C. F., 2020, "Query sequences for the update of the ExED", https://doi.org/10.18419/darus-622, DaRUS, V1, UNF:6:eFcDsa8udm3F11lB7M2q6w== [fileUNF] |
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Citation |
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Title: |
Query sequences for the update of the ExED |
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Alternative Title: |
Query sequences for the update of the Expansin Engineering Database |
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Identification Number: |
doi:10.18419/darus-622 |
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Authoring Entity: |
Lohoff, Caroline (Universität Stuttgart) |
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Buchholz, Patrick C. F. (Universität Stuttgart) |
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Distributor: |
DaRUS |
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Access Authority: |
Pleiss, Jürgen |
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Depositor: |
Buchholz, Patrick C. F. |
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Date of Deposit: |
2020-01-27 |
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Holdings Information: |
https://doi.org/10.18419/darus-622 |
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Study Scope |
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Keywords: |
Medicine, Health and Life Sciences, Protein sequence, Amino acid sequence |
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Abstract: |
Query sequences for the individual BLAST searches used to update the Expansin Engineering Database (ExED, <a href="https://exed.biocatnet.de/">https://exed.biocatnet.de/</a>). |
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Methodology and Processing |
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Sources Statement |
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Data Sources: |
Expansin Engineering Database (<a href="https://exed.biocatnet.de/">https://exed.biocatnet.de/</a>) |
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Protein Database (<a href="https://www.ncbi.nlm.nih.gov/protein/">https://www.ncbi.nlm.nih.gov/protein/</a>) |
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RCSB Protein Data Bank (<a href="https://www.rcsb.org/">https://www.rcsb.org/</a>) |
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UniProt (<a href="https://www.uniprot.org/">https://www.uniprot.org/</a>) |
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Data Access |
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Other Study Description Materials |
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Related Publications |
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Citation |
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Title: |
Lohoff C., Buchholz P. C. F., Le Roes-Hill M. & Pleiss J. (2020). The Expansin Engineering Database: a navigation and classification tool for expansins and homologues. Proteins: Structure, Function, and Bioinformatics 89:2. |
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Identification Number: |
10.1002/prot.26001 |
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Bibliographic Citation: |
Lohoff C., Buchholz P. C. F., Le Roes-Hill M. & Pleiss J. (2020). The Expansin Engineering Database: a navigation and classification tool for expansins and homologues. Proteins: Structure, Function, and Bioinformatics 89:2. |
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File Description--f1656 |
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File: Update_2_Centroids_USEARCH.tab |
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Notes: |
UNF:6:eFcDsa8udm3F11lB7M2q6w== |
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List of Variables: |
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Variables |
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f1656 Location: |
Variable Format: character Notes: UNF:6:eFcDsa8udm3F11lB7M2q6w== |
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Label: |
Update_1_Seed_sequences_Hfams_1-25.fasta |
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Text: |
Seed (query) sequences for the initial setup of the ExED. Protein sequences are given in FASTA format. Headers correspond to sequence identifiers in the style of UniprotKB. |
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Notes: |
application/octet-stream |
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Label: |
Update_2_Centroids_USEARCH.fasta |
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Text: |
Seed (query) sequences for the first update of the ExED (USEARCH centroid sequences). Protein sequences are given in FASTA format with one line per sequence. Headers correspond to sequence identifiers of the Expansin Engineering Database. |
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Notes: |
application/octet-stream |