Query sequences for the update of the ExED (doi:10.18419/darus-622)
(Query sequences for the update of the Expansin Engineering Database)

View:

Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Part 5: Other Study-Related Materials
Entire Codebook

(external link)

Document Description

Citation

Title:

Query sequences for the update of the ExED

Identification Number:

doi:10.18419/darus-622

Distributor:

DaRUS

Date of Distribution:

2020-01-30

Version:

1

Bibliographic Citation:

Lohoff, Caroline; Buchholz, Patrick C. F., 2020, "Query sequences for the update of the ExED", https://doi.org/10.18419/darus-622, DaRUS, V1, UNF:6:eFcDsa8udm3F11lB7M2q6w== [fileUNF]

Study Description

Citation

Title:

Query sequences for the update of the ExED

Alternative Title:

Query sequences for the update of the Expansin Engineering Database

Identification Number:

doi:10.18419/darus-622

Authoring Entity:

Lohoff, Caroline (Universität Stuttgart)

Buchholz, Patrick C. F. (Universität Stuttgart)

Distributor:

DaRUS

Access Authority:

Pleiss, Jürgen

Depositor:

Buchholz, Patrick C. F.

Date of Deposit:

2020-01-27

Study Scope

Keywords:

Medicine, Health and Life Sciences, Protein sequence, Amino acid sequence

Abstract:

Query sequences for the individual BLAST searches used to update the Expansin Engineering Database (ExED, <a href="https://exed.biocatnet.de/">https://exed.biocatnet.de/</a>).

Methodology and Processing

Sources Statement

Data Sources:

Expansin Engineering Database (<a href="https://exed.biocatnet.de/">https://exed.biocatnet.de/</a>)

Protein Database (<a href="https://www.ncbi.nlm.nih.gov/protein/">https://www.ncbi.nlm.nih.gov/protein/</a>)

RCSB Protein Data Bank (<a href="https://www.rcsb.org/">https://www.rcsb.org/</a>)

UniProt (<a href="https://www.uniprot.org/">https://www.uniprot.org/</a>)

Data Access

Notes:

CC0 Waiver

Other Study Description Materials

Related Publications

Citation

Identification Number:

10.1002/prot.26001

Bibliographic Citation:

Lohoff C., Buchholz P. C. F., Le Roes-Hill M. & Pleiss J. (2020). The Expansin Engineering Database: a navigation and classification tool for expansins and homologues. Proteins: Structure, Function, and Bioinformatics 89:2.

File Description--f1656

File: Update_2_Centroids_USEARCH.tab

  • Number of cases: 25

  • No. of variables per record: 1

  • Type of File: text/tab-separated-values

Notes:

UNF:6:eFcDsa8udm3F11lB7M2q6w==

Variable Description

List of Variables:

Variables

SequenceID;NCBI

f1656 Location:

Variable Format: character

Notes: UNF:6:eFcDsa8udm3F11lB7M2q6w==

Other Study-Related Materials

Label:

Update_1_Seed_sequences_Hfams_1-25.fasta

Text:

Seed (query) sequences for the initial setup of the ExED. Protein sequences are given in FASTA format. Headers correspond to sequence identifiers in the style of UniprotKB.

Notes:

application/octet-stream

Other Study-Related Materials

Label:

Update_2_Centroids_USEARCH.fasta

Text:

Seed (query) sequences for the first update of the ExED (USEARCH centroid sequences). Protein sequences are given in FASTA format with one line per sequence. Headers correspond to sequence identifiers of the Expansin Engineering Database.

Notes:

application/octet-stream