The FLAME-accelerated signalling tool (FaST) for facile parallelisation of flexible agent-based models of cell signallingdoi:10.18419/darus-1327DaRUS2021-02-081Fullstone, Gavin, 2021, "The FLAME-accelerated signalling tool (FaST) for facile parallelisation of flexible agent-based models of cell signalling", https://doi.org/10.18419/darus-1327, DaRUS, V1The FLAME-accelerated signalling tool (FaST) for facile parallelisation of flexible agent-based models of cell signallingdoi:10.18419/darus-1327Fullstone, GavinDaRUSFullstone, GavinFullstone, Gavin2021-02-04Medicine, Health and Life SciencesThis folder contains the FaST software, as well as all the raw data and tools to replicate this study.
Paper_Data.pzfx: All raw and processed data in the main figures
MCell_Model.tar.gz: The MCell model used in Figure 5
FaST_Software.tar.gz: The FaST software tool. Scripts to replicate the findings of the study are enclosed in the /example folder. Documentation and a tutorial for building the simulations is included in the /doc folder
Visualiser_Config.xml: A configuration file for visualising model simulations, for use with the FLAME Visualiser Software
Iteration_Data.tar.gz: Contains an example of raw outputs from a single ApoptoCell simulationThis study used the following software to generate data: FLAME LIBMBOARD 0.3.1, FLAME Xparser 0.17.0, FLAME GPU 1.4, Visual Studio Community 2015, GCC 4.2.1, OpenMPI 2.0.2, NVIDIA CUDA 9.0, MATLAB 2016b, MCell 3.4, Cellblender 1.1. All data analysis and statistics were performed using Graphad Prism 6.0h.The FLAME-accelerated signalling tool (FaST) for facile parallelisation of flexible agent-based models of cell signalling. npj Systems Biology and Applications (2020)6:1010.1038/s41540-020-0128-xThe FLAME-accelerated signalling tool (FaST) for facile parallelisation of flexible agent-based models of cell signalling. npj Systems Biology and Applications (2020)6:10FaST_Software.tar.gzFaST Softwareapplication/x-gzipIteration_Data.tar.gzExample iteration data from modelapplication/x-gzipMCell_Model.tar.gzMCell model used as a comparison in manuscriptapplication/x-gzipPaper_Data.pzfxAll processed data from manuscriptapplication/x-graphpad-prism-pzfxVisualiser_Config.xmlVisualiser configurations file to be used with FLAME Visualiser Softwaretext/xml