|
View: |
Part 1: Document Description
|
|
Citation |
|
|---|---|
|
Title: |
GLASSgo Setup & Usage |
|
Identification Number: |
doi:10.18419/darus-517 |
|
Distributor: |
DaRUS |
|
Date of Distribution: |
2020-01-22 |
|
Version: |
2 |
|
Bibliographic Citation: |
Schäfer, Richard A.; Lott, Steffen C.; Georg, Jens; Grüning, Björn; Hess, Wolfgang; Voß, Björn, 2020, "GLASSgo Setup & Usage", https://doi.org/10.18419/darus-517, DaRUS, V2 |
|
Citation |
|
|
Title: |
GLASSgo Setup & Usage |
|
Subtitle: |
using GLASSgo via Docker, Galaxy and the Web Server |
|
Identification Number: |
doi:10.18419/darus-517 |
|
Authoring Entity: |
Schäfer, Richard A. (University of Stuttgart) |
|
Lott, Steffen C. (University of Freiburg) |
|
|
Georg, Jens (University of Freiburg) |
|
|
Grüning, Björn (University of Freiburg) |
|
|
Hess, Wolfgang (University of Freiburg) |
|
|
Voß, Björn (University of Stuttgart) |
|
|
Other identifications and acknowledgements: |
Richard A. Schäfer |
|
Producer: |
Voß, Björn |
|
Date of Production: |
2020-04-02 |
|
Grant Number: |
031A310 and 031L0164A to B.V |
|
Distributor: |
DaRUS |
|
Access Authority: |
Voß, Björn |
|
Depositor: |
Schäfer, Richard |
|
Date of Deposit: |
2020-01-16 |
|
Date of Distribution: |
2020-01-22 |
|
Holdings Information: |
https://doi.org/10.18419/darus-517 |
|
Study Scope |
|
|
Keywords: |
Computer and Information Science, GLASSgo Docker Manual Tutorial |
|
Abstract: |
Instruction video to install and use GLASSgo on multiple resources (e.g., Docker, Galaxy, web server). GLASSgo is available at <a href="https://github.com/lotts/GLASSgo_ACC-Version/" target="_blank">Github</a> with instructions and application data and is distributed under the MIT license. Furthermore, GLASSgo can applied using the <a href="https://rna.usegalaxy.eu/" target="_blank">RNA Workbench Server</a> or the <a href="http://rna.informatik.uni-freiburg.de/GLASSgo/">GLASSgo Web Server</a> |
|
Kind of Data: |
Video |
|
Notes: |
The analyses illustrated in this video were performed using GLASSgo v1.5.2 using Docker v19.03.4 and Galaxy v20.01. Furthermore, the RNA workbench server and the GLASSgo web server were operated on GLASSgo 1.5.2 and accessed on the 28th of March 2020. |
|
Methodology and Processing |
|
|
Sources Statement |
|
|
Data Access |
|
|
Other Study Description Materials |
|
|
Related Publications |
|
|
Citation |
|
|
Title: |
Lott, S. C.; Schäfer, R. A.; Mann, M.; Backofen, R.; Hess, W. R.; Voß, B.; Georg, J. (2018): GLASSgo - Automated and Reliable Detection of sRNA Homologs From a Single Input Sequence. In: Frontiers in Genetics, 9:124. |
|
Identification Number: |
10.3389/fgene.2018.00124 |
|
Bibliographic Citation: |
Lott, S. C.; Schäfer, R. A.; Mann, M.; Backofen, R.; Hess, W. R.; Voß, B.; Georg, J. (2018): GLASSgo - Automated and Reliable Detection of sRNA Homologs From a Single Input Sequence. In: Frontiers in Genetics, 9:124. |
|
Label: |
GLASSgo_setup.mp4 |
|
Text: |
This is an instruction video that guides you through the process of installing and setting up GLASSgo using Docker and within Galaxy. |
|
Notes: |
video/mp4 |
|
Label: |
GLASSgo_usage.mp4 |
|
Text: |
This instruction video walks you through usage of GLASSgo within Galaxy. |
|
Notes: |
video/mp4 |