Occurrence of expansins in the tree of life (doi:10.18419/darus-693)

View:

Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Entire Codebook

(external link)

Document Description

Citation

Title:

Occurrence of expansins in the tree of life

Identification Number:

doi:10.18419/darus-693

Distributor:

DaRUS

Date of Distribution:

2020-04-09

Version:

1

Bibliographic Citation:

Lohoff, Caroline, 2020, "Occurrence of expansins in the tree of life", https://doi.org/10.18419/darus-693, DaRUS, V1, UNF:6:eK0oQia4QiaiEO0m1BJFeA== [fileUNF]

Study Description

Citation

Title:

Occurrence of expansins in the tree of life

Identification Number:

doi:10.18419/darus-693

Authoring Entity:

Lohoff, Caroline (Universität Stuttgart)

Distributor:

DaRUS

Access Authority:

Pleiss, Jürgen

Depositor:

Buchholz, Patrick C. F.

Date of Deposit:

2020-03-04

Study Scope

Keywords:

Medicine, Health and Life Sciences, taxonomic lineage, database search, taxonomy

Abstract:

Comparison between expansins found in the Expansin Engineering Database (ExED) and literature.

Methodology and Processing

Sources Statement

Data Sources:

Expansin Engineering Database (<a href="https://exed.biocatnet.de/">https://exed.biocatnet.de/</a>)

<br> Chase WR, Zhaxybayeva O, Rocha J, Cosgrove DJ, Shapiro LR (2020) Global cellulose biomass, horizontal gene transfers and domain fusions drive microbial expansin evolution. New Phytol. 226(3):921-938. <a href="https://doi.org/10.1111/nph.16428">doi:10.1111/nph.16428</a>

Data Access

Notes:

CC0 Waiver

Other Study Description Materials

Related Publications

Citation

Identification Number:

10.1002/prot.26001

Bibliographic Citation:

Lohoff C., Buchholz P. C. F., Le Roes-Hill M. & Pleiss J. (2020). The Expansin Engineering Database: a navigation and classification tool for expansins and homologues. Proteins: Structure, Function, and Bioinformatics 89:2.

File Description--f2788

File: Taxonomic_analysis.tab

  • Number of cases: 90

  • No. of variables per record: 6

  • Type of File: text/tab-separated-values

Notes:

UNF:6:eK0oQia4QiaiEO0m1BJFeA==

Variable Description

List of Variables:

Variables

Superkingdom

f2788 Location:

Variable Format: character

Notes: UNF:6:+GsQgLckd2PhkIshqYum3Q==

Major groups in Chase et al. 2020

f2788 Location:

Variable Format: character

Notes: UNF:6:FlgvhrC219PfxjKsJ3EtMw==

Lineage contains expansin genes after Chase et al. 2020

f2788 Location:

Variable Format: character

Notes: UNF:6:49Af4sBgBbl7wr8hCWK35Q==

Lineage contains expansin genes based on the ExED

f2788 Location:

Variable Format: character

Notes: UNF:6:9/ZtFoJ6QsA8sLQamlN5Ig==

Number of sequences in the ExED

f2788 Location:

Summary Statistics: Mean 273.7444444444444; Valid 90.0; Min. 0.0; StDev 1460.3789069741727; Max. 9697.0

Variable Format: numeric

Notes: UNF:6:SFJ8t0Luxz7Va/3d5n9M3A==

Further information

f2788 Location:

Variable Format: character

Notes: UNF:6:T2DMQLdNqKEC2WHy4mbJTw==