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Part 1: Document Description
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Citation |
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Title: |
Enzymatically induced carbonate precipitation and its effect on capillary pressure-saturation relations of porous media - microfluidics samples |
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Identification Number: |
doi:10.18419/darus-2791 |
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Distributor: |
DaRUS |
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Date of Distribution: |
2022-10-21 |
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Version: |
1 |
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Bibliographic Citation: |
Hommel, Johannes; Weinhardt, Felix, 2022, "Enzymatically induced carbonate precipitation and its effect on capillary pressure-saturation relations of porous media - microfluidics samples", https://doi.org/10.18419/darus-2791, DaRUS, V1 |
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Citation |
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Title: |
Enzymatically induced carbonate precipitation and its effect on capillary pressure-saturation relations of porous media - microfluidics samples |
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Identification Number: |
doi:10.18419/darus-2791 |
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Authoring Entity: |
Hommel, Johannes (Universität Stuttgart) |
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Weinhardt, Felix (Universität Stuttgart) |
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Other identifications and acknowledgements: |
Weinhardt, Felix |
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Other identifications and acknowledgements: |
Hommel, Johannes |
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Other identifications and acknowledgements: |
Hommel, Johannes |
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Producer: |
Hommel, Johannes |
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Date of Production: |
2022-04-15 |
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Software used in Production: |
PoreSpy |
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Software used in Production: |
DuMuX |
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Software used in Production: |
Matlab |
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Grant Number: |
380443677 |
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Grant Number: |
327154368 - SFB 1313 |
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Distributor: |
DaRUS |
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Access Authority: |
Hommel, Johannes |
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Depositor: |
Hommel, Johannes |
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Date of Deposit: |
2022-03-29 |
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Holdings Information: |
https://doi.org/10.18419/darus-2791 |
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Study Scope |
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Keywords: |
Earth and Environmental Sciences, Enzymatically Induced Calcium Carbonate Precipitation, Porous Media, Biomineralization, Capillary Pressure-Saturation Relation |
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Topic Classification: |
Mineral Precipitation, Capillary Pressure-Saturation Relation |
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Abstract: |
Content: <p>This dataset includes processed data from two experiments on enzymatically induced carbonate precipitation (<b>2D1</b> and <b>2D2</b>), whose raw data is already published in <a href="https://doi.org/10.18419/darus-1799">https://doi.org/10.18419/darus-1799</a> (there named Quasi-2D-1 and Quasi-2D-2). </p> <p> This dataset contains in detail: </p> <ul> <li>Files for reproducing the simulation results: <ul> <li> the docker container based on the image "<b>gehring2022a.tar</b>".</li> <li>The script script "<b>docker_gehring2022a</b>" can be used to run the docker container. </li> <li>Alternatively, the code is published at: <a href="https://git.iws.uni-stuttgart.de/dumux-pub/gehring2022a">https://git.iws.uni-stuttgart.de/dumux-pub/gehring2022a</a>.</li> </ul> </li> <li>The other files "<b>Files.tar</b>": <ul> <li>a folder for each experiment (<b>2D1</b>: based on Quasi-2D-1 in <a href="https://doi.org/10.18419/darus-1799">https://doi.org/10.18419/darus-1799</a>, <b>2D2</b>: based on Quasi-2D-2 in <a href="https://doi.org/10.18419/darus-1799">https://doi.org/10.18419/darus-1799</a>) <ul> <li>subfolders for 6 different porosity reductions, named <b>GP1_<i>porosity-reduction-in-percent</i></b> and <b>GP2_<i>porosity-reduction-in-percent</i></b>, respectively. <ul> <li>the reconstructed 3D geometry in a stack of 16 slices (<b>original-image-date_<i>slice-number</i>.png</b>) </li> <li>the python scripts to extract pore-networks from the geometry using PoresSpy (<b>PNGtoPN_3D_SNOW.py</b>)</li> <li>the resulting pore network from the extraction (<b>outputfile.csv</b>)</li> <li>the python script to generate a grid file from <b>outputfile.csv</b> (<b>PN2GridFormat.py</b>)</li> <li>the resulting grid file (<b>GP01_<i>porosity-reduction-in-percent</i>.dgf</b> or <b>GP02_<i>porosity-reduction-in-percent</i>.dgf</b>, respectively)</li> <li>the input file for a numerical, quasi-static primary-drainage experiment in DuMuX to determine the capillary pressure-saturation relation (<b>test_pnm_2p_static.input</b>)</li> <li>the result of the numerical, quasi-static primary-drainage experiment in DuMuX (<b>test_pnm_2p_static_pc-s-curve.txt</b>)</li> </ul> </li> <li>the details of the pore networks for each porosity reduction as a matlab data set <b>GP1_<i>porosity-reduction-in-percent</i>.mat</b> or <b>GP1_<i>porosity-reduction-in-percent</i>.mat</b>, respectively</li> <li>the results of the numerical, quasi-static primary-drainage experiment in DuMuX for each porosity reduction compiled into a spreadsheet (<b>Mineralization.xlsx</b>)</li> <li>the results of the numerical, quasi-static primary-drainage experiment in DuMuX for each porosity reduction compiled into a matlab data set (<b>mineralization.mat</b>) </li> </ul> </li> <li>matlab scripts to process the capillary pressure-saturation curves resulting from the numerical, quasi-static primary-drainage experiments: <ul> <li>fitting Brooks-Corey-type relations to the observed capillary pressure-saturation curves (<b>fitting_pcSwBrooksCorey.m</b>) </li> <li>fitting Van Genuchten-type relations to the observed capillary pressure-saturation curves (<b>fitting_pcSwVanGenuchten.m</b>)</li> <li>fitting the depencency of the coefficients of the obtained Brooks-Corey-type relations on the porosity reduction (<b>coeffFit_BC.m</b>) </li> <li>fitting the depencency of the coefficients of the obtained Van Genuchten-type relations on the porosity reduction (<b>coeffFit_VG.m</b>) </li> </ul> </li> <li>matlab data set containing all coefficient values for the Brooks-Corey-type relation at various porosity reductions for 2D1 (<b>pcSwCoeff_BC1.mat</b>) </li> <li>matlab data set containing all coefficient values for the Brooks-Corey-type relation at various porosity reductions for 2D2 (<b>pcSwCoeff_BC2.mat</b>) </li> <li>matlab data set containing all coefficient values for the Van Genuchten-type relation at various porosity reductions for 2D1 (<b>pcSwCoeff_VG1.mat</b>) </li> <li>matlab data set containing all coefficient values for the Van Genuchten-type relation at various porosity reductions for 2D2 (<b>pcSwCoeff_VG2.mat</b>) </li> <li>matlab data set containing the fitted parameterization of the coefficient's dependency on porosity change the Brooks-Corey-type relation of experiment 2D1 (<b>BCParams2D1.mat</b>) </li> <li>matlab data set containing the fitted parameterization of the coefficient's dependency on porosity change the Brooks-Corey-type relation of experiment 2D2 (<b>BCParams2D2.mat</b>) </li> <li>matlab data set containing the fitted parameterization of the coefficient's dependency on porosity change theVan Genuchten-type relation of experiment 2D1 (<b>VGParams2D1.mat</b>) </li> <li>matlab data set containing the fitted parameterization of the coefficient's dependency on porosity change the Van Genuchten-type relation of experiment 2D2 (<b>VGParams2D2.mat</b>) </li> </ul> </li> </ul> |
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Kind of Data: |
experimental data |
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Kind of Data: |
process-produced data |
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Methodology and Processing |
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Sources Statement |
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Data Access |
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Other Study Description Materials |
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Related Studies |
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The data in this dataset is based on two experiments on enzymatically induced carbonate precipitation (2D1 and 2D2), whose raw data is already published in <a href="https://doi.org/10.18419/darus-1799">https://doi.org/10.18419/darus-1799</a> (there named Quasi-2D-1 and Quasi-2D-2) |
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Related Publications |
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Citation |
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Title: |
Hommel, J.; Gehring, L., Weinhardt, F., Ruf, M. & Steeb, H. (2022). Effects of enzymatically induced carbonate precipitation on capillary pressure-saturation relations. <em>Minerals</em>, 12(10), 1186. |
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Identification Number: |
10.3390/min12101186 |
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Bibliographic Citation: |
Hommel, J.; Gehring, L., Weinhardt, F., Ruf, M. & Steeb, H. (2022). Effects of enzymatically induced carbonate precipitation on capillary pressure-saturation relations. <em>Minerals</em>, 12(10), 1186. |
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Label: |
Dockerfile |
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Notes: |
text/plain; charset=US-ASCII |
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Label: |
docker_gehring2022a.sh |
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Notes: |
application/x-shellscript |
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Label: |
Files.tar.gz |
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Notes: |
application/gzip |
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Label: |
gehring2022a.tar |
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Notes: |
application/x-tar |