Experimental Data and Models for "Knowledge-Based Modeling of Simulation Behavior for Bayesian Optimization" (doi:10.18419/darus-3550)

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Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Part 5: Other Study-Related Materials
Entire Codebook

Document Description

Citation

Title:

Experimental Data and Models for "Knowledge-Based Modeling of Simulation Behavior for Bayesian Optimization"

Identification Number:

doi:10.18419/darus-3550

Distributor:

DaRUS

Date of Distribution:

2023-07-01

Version:

1

Bibliographic Citation:

Huber, Felix; Bürkner, Paul-Christian; Göddeke, Dominik; Schulte, Miriam, 2023, "Experimental Data and Models for "Knowledge-Based Modeling of Simulation Behavior for Bayesian Optimization"", https://doi.org/10.18419/darus-3550, DaRUS, V1, UNF:6:QWTNrKTVYgetwfCBQfeWvw== [fileUNF]

Study Description

Citation

Title:

Experimental Data and Models for "Knowledge-Based Modeling of Simulation Behavior for Bayesian Optimization"

Identification Number:

doi:10.18419/darus-3550

Authoring Entity:

Huber, Felix (Universität Stuttgart)

Bürkner, Paul-Christian (Universität Stuttgart)

Göddeke, Dominik (Universität Stuttgart)

Schulte, Miriam (Universität Stuttgart)

Grant Number:

EXC 2075 - 390740016

Distributor:

DaRUS

Access Authority:

Schulte, Miriam

Access Authority:

Göddeke, Dominik

Access Authority:

Huber, Felix

Depositor:

Huber, Felix

Date of Deposit:

2023-06-12

Holdings Information:

https://doi.org/10.18419/darus-3550

Study Scope

Keywords:

Computer and Information Science, Mathematical Sciences, Bayesian Optimization, Constrained Optimization, Numerical Simulation, Bayesian Modeling, Multi-Scale Simulation, Time Integration Error, Skeletal Muscle Simulation

Abstract:

<p>These files contain the data for the OpenDiHu experiments in sections 5.1.3 and 5.2.<br> The settings used for the OpenDiHu simulations are in the <code>opendihu/</code> folder.<br> The simulation data is in the <code>data/</code> folder and the used stan models are in the <code>models/</code> folder.</p> For more details see <a href="https://darus.uni-stuttgart.de/file.xhtml?fileId=239645"><code>README.md</code></a>.

Methodology and Processing

Sources Statement

Data Access

Other Study Description Materials

Related Publications

Citation

Title:

Huber, Felix; Bürkner, Paul-Christian; Göddeke, Dominik; Schulte, Miriam Knowledge-Based Modeling of Simulation Behavior for Bayesian Optimization Computational Mechanics (submitted)

Bibliographic Citation:

Huber, Felix; Bürkner, Paul-Christian; Göddeke, Dominik; Schulte, Miriam Knowledge-Based Modeling of Simulation Behavior for Bayesian Optimization Computational Mechanics (submitted)

File Description--f239648

File: CN.tab

  • Number of cases: 225

  • No. of variables per record: 7

  • Type of File: text/tab-separated-values

Notes:

UNF:6:r1VmlSp0sWOV3KTLO6KM1Q==

File Description--f239649

File: IE.tab

  • Number of cases: 225

  • No. of variables per record: 7

  • Type of File: text/tab-separated-values

Notes:

UNF:6:F3ZKXjb34OXlR7Byp7eTWg==

File Description--f239642

File: scaled.tab

  • Number of cases: 225

  • No. of variables per record: 6

  • Type of File: text/tab-separated-values

Notes:

UNF:6:FfvXSS6Z9+31H9ZsrSlgSw==

Variable Description

List of Variables:

Variables

i

f239648 Location:

Summary Statistics: StDev 4.330127018922194; Max. 14.0; Valid 225.0; Min. 0.0; Mean 7.0;

Variable Format: numeric

Notes: UNF:6:+bvgFdR/OELKPRROxWFxPQ==

j

f239648 Location:

Summary Statistics: StDev 4.330127018922194; Min. 0.0; Max. 14.0; Valid 225.0; Mean 7.0

Variable Format: numeric

Notes: UNF:6:AU0sZa3dn/kKtWENIJy3NQ==

error

f239648 Location:

Summary Statistics: Valid 225.0; Min. 1.4480573552344995E-7; Max. 0.001655934458865578; Mean 2.2319609230743513E-4; StDev 4.537596971744194E-4

Variable Format: numeric

Notes: UNF:6:stH2RwLE7lKWf7P/wqMU/A==

run time

f239648 Location:

Summary Statistics: StDev 7.338258339979979; Mean 6.561066666666667; Valid 225.0; Min. 2.22; Max. 38.62

Variable Format: numeric

Notes: UNF:6:Wv2kIluEQcZF1nBrzBPKxA==

run time in setup

f239648 Location:

Summary Statistics: Mean 2.362706070222222; Valid 225.0; Min. 2.1991780899999993; StDev 0.20979723222368382; Max. 4.438359999999998;

Variable Format: numeric

Notes: UNF:6:KThOZNpqIABhV5YJKCbpVg==

run time in integrator

f239648 Location:

Summary Statistics: Max. 34.18164; Min. 0.0034582099999999998; StDev 7.205379484622193; Valid 225.0; Mean 4.198360596444445

Variable Format: numeric

Notes: UNF:6:eU+e25Q0Ro5UtSRIJIB5MQ==

scaled time

f239648 Location:

Summary Statistics: Mean 422.1987657146668; Max. 3422.6023600000003; StDev 720.6690168835098; Min. 2.63236279; Valid 225.0

Variable Format: numeric

Notes: UNF:6:RaDPyDdXsiDpWHdmTvuSJA==

i

f239649 Location:

Summary Statistics: Min. 0.0; Mean 7.0; Valid 225.0; StDev 4.330127018922194; Max. 14.0

Variable Format: numeric

Notes: UNF:6:+bvgFdR/OELKPRROxWFxPQ==

j

f239649 Location:

Summary Statistics: Mean 7.0; Min. 0.0; StDev 4.330127018922194; Max. 14.0; Valid 225.0

Variable Format: numeric

Notes: UNF:6:AU0sZa3dn/kKtWENIJy3NQ==

error

f239649 Location:

Summary Statistics: Max. 0.049721124561786165; StDev 0.013260472965415663; Valid 225.0; Mean 0.00677551857063354; Min. 2.9677761064511396E-6

Variable Format: numeric

Notes: UNF:6:H3YuMld4NQG7VGmurGdt+w==

run time

f239649 Location:

Summary Statistics: Mean 6.493066666666667; Max. 37.41; Min. 2.2099999999999995; Valid 225.0; StDev 7.182422984520712;

Variable Format: numeric

Notes: UNF:6:Ov4Kf8McWS7fusNaxYII5g==

run time in setup

f239649 Location:

Summary Statistics: StDev 0.21680478805224496; Mean 2.3761093144888887; Valid 225.0; Min. 2.1727229999999995; Max. 4.438349999999995

Variable Format: numeric

Notes: UNF:6:+/ZHFtKNNUfDldsWGDJgtg==

run time in integrator

f239649 Location:

Summary Statistics: Mean 4.116957352177778; Max. 32.971650000000004; Valid 225.0; StDev 7.057108238777767; Min. 0.00378858

Variable Format: numeric

Notes: UNF:6:XjRwnL5gKXPNSgRInjsy9A==

scaled time

f239649 Location:

Summary Statistics: Mean 414.0718445322666; StDev 705.8339435266831; Max. 3301.6033500000003; Valid 225.0; Min. 2.72506942

Variable Format: numeric

Notes: UNF:6:5NKt00X2eYkQXPXFaynBGw==

i

f239642 Location:

Summary Statistics: Mean 7.0; Valid 225.0; StDev 4.330127018922194; Max. 14.0; Min. 0.0

Variable Format: numeric

Notes: UNF:6:+bvgFdR/OELKPRROxWFxPQ==

j

f239642 Location:

Summary Statistics: Min. 0.0; Valid 225.0; StDev 4.330127018922194; Mean 7.0; Max. 14.0

Variable Format: numeric

Notes: UNF:6:AU0sZa3dn/kKtWENIJy3NQ==

CN-e

f239642 Location:

Summary Statistics: Mean 0.0013004485231252088; StDev 0.004137023393084734; Valid 225.0; Max. 0.026375536077914107; Min. 7.798700444184117E-9;

Variable Format: numeric

Notes: UNF:6:xQuGZhAcUgyO/ygxDUx33Q==

CN-t100

f239642 Location:

Summary Statistics: Max. 5511.994369675993; StDev 793.0888452597418; Min. 1.5132463601083626; Mean 426.3726169454958; Valid 225.0

Variable Format: numeric

Notes: UNF:6:RGidtJ60YPORNm7YTVZzyQ==

IE-e

f239642 Location:

Summary Statistics: Mean 0.006519046223181946; StDev 0.011639002013786948; Max. 0.04193624939283092; Valid 225.0; Min. 2.7465751448187456E-6

Variable Format: numeric

Notes: UNF:6:wOio0p3jEPghH2yW90Y5EA==

IE-t100

f239642 Location:

Summary Statistics: Min. 1.447863066729997; StDev 696.2666235430229; Mean 397.9806622376351; Max. 4998.711614964488; Valid 225.0;

Variable Format: numeric

Notes: UNF:6:FX4EWO4vGDUrlnIthpz57A==

Other Study-Related Materials

Label:

README.md

Notes:

text/markdown

Other Study-Related Materials

Label:

1D_sq_g_c_fix.fit.stan

Notes:

application/octet-stream

Other Study-Related Materials

Label:

1D_sq_g_c_fix.gq-pw.stan

Notes:

application/octet-stream

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Label:

1D_sq_g_c_fix.gq.stan

Notes:

application/octet-stream

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1D_sq_g_lc_fix.fit.stan

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application/octet-stream

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1D_sq_g_lc_fix.gq-pw.stan

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application/octet-stream

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1D_sq_g_lc_fix.gq.stan

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application/octet-stream

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2D_inv_g_lc_fix.fit.stan

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2D_inv_g_lc_fix.gq-pw.stan

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application/octet-stream

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2D_inv_g_lc_fix.gq.stan

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2D_inv_g_lc_full.mle.stan

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application/octet-stream

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2D_lsqm-0_g_lc_fix.gq.stan

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2D_lsqm-0_g_lc_full.mle.stan

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application/octet-stream

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2D_sqm-0_g_lc_fix.fit.stan

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application/octet-stream

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2D_sqm-0_g_lc_fix.gq-pw.stan

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Label:

2D_sqm-0_g_lc_fix.gq.stan

Notes:

application/octet-stream

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Label:

2D_sqm-0_g_lc_full.mle.stan

Notes:

application/octet-stream

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gp.stan

Notes:

application/octet-stream

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gp_g.stan

Notes:

application/octet-stream

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kernel_g.stan

Notes:

application/octet-stream

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Label:

fibre_0_0D_0000350.npz

Notes:

application/octet-stream

Other Study-Related Materials

Label:

settings_multiple_fibers.py

Notes:

text/x-python