GraphML files for protein sequence networks of expansin homologueshttps://doi.org/10.18419/darus-624Lohoff, CarolineDaRUS2020-01-302021-05-03T07:35:21ZGraphML files for undirected weighted graphs with nodes that represent protein sequences of expansin homologues. Protein sequences were clustered by a threshold of sequence identity to derive representative sequences.Pairwise sequence identity between two sequences was derived from global Needleman-Wunsch alignment. Protein sequence networks were generated with edge weights of pairwise sequence identity, filtered by a predefined threshold. Metadata of the nodes (e.g. annotations) and of the edges (the edge weights) were summarized in GraphML files.Medicine, Health and Life Sciencesprotein sequencegraphnetworkamino acid sequencealignmentEnglishLohoff C., Buchholz P. C. F., Le Roes-Hill M. & Pleiss J. (2020). The Expansin Engineering Database: a navigation and classification tool for expansins and homologues. Proteins: Structure, Function, and Bioinformatics 89:2., doi, 10.1002/prot.26001, https://doi.org/10.1002/prot.260012020-01-30Buchholz, Patrick C. F.2020-01-27Expansin Engineering Database (<a href="https://exed.biocatnet.de/">https://exed.biocatnet.de/</a>)Carbohydrate-Active enZYmes Database (<a href="http://www.cazy.org/">http://www.cazy.org/</a>)Pfam Database (<a href="https://pfam.xfam.org/">https://pfam.xfam.org/</a>)CC BY 4.0