Occurrence of expansins in the tree of life (doi:10.18419/darus-693)

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Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
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Document Description
Citation
Title:	Occurrence of expansins in the tree of life
Identification Number:	doi:10.18419/darus-693
Distributor:	DaRUS
Date of Distribution:	2020-04-09
Version:	1
Bibliographic Citation:	Lohoff, Caroline, 2020, "Occurrence of expansins in the tree of life", https://doi.org/10.18419/darus-693, DaRUS, V1, UNF:6:eK0oQia4QiaiEO0m1BJFeA== [fileUNF]
Study Description
Citation
Title:	Occurrence of expansins in the tree of life
Identification Number:	doi:10.18419/darus-693
Authoring Entity:	Lohoff, Caroline (Universität Stuttgart)
Distributor:	DaRUS
Access Authority:	Pleiss, Jürgen
Depositor:	Buchholz, Patrick C. F.
Date of Deposit:	2020-03-04
Holdings Information:	https://doi.org/10.18419/darus-693
Study Scope
Keywords:	Medicine, Health and Life Sciences, taxonomic lineage, database search, taxonomy
Abstract:	Comparison between expansins found in the Expansin Engineering Database (ExED) and literature.
Methodology and Processing
Sources Statement
Data Sources:	Expansin Engineering Database (<a href="https://exed.biocatnet.de/">https://exed.biocatnet.de/</a>)
	<br> Chase WR, Zhaxybayeva O, Rocha J, Cosgrove DJ, Shapiro LR (2020) Global cellulose biomass, horizontal gene transfers and domain fusions drive microbial expansin evolution. New Phytol. 226(3):921-938. <a href="https://doi.org/10.1111/nph.16428">doi:10.1111/nph.16428</a>
Data Access
Other Study Description Materials
Related Publications
Citation
Title:	Lohoff C., Buchholz P. C. F., Le Roes-Hill M. & Pleiss J. (2020). The Expansin Engineering Database: a navigation and classification tool for expansins and homologues. Proteins: Structure, Function, and Bioinformatics 89:2.
Identification Number:	10.1002/prot.26001
Bibliographic Citation:	Lohoff C., Buchholz P. C. F., Le Roes-Hill M. & Pleiss J. (2020). The Expansin Engineering Database: a navigation and classification tool for expansins and homologues. Proteins: Structure, Function, and Bioinformatics 89:2.
File Description--f2788
File: Taxonomic_analysis.tab
	Number of cases: 90 No. of variables per record: 6 Type of File: text/tab-separated-values
Notes:	UNF:6:eK0oQia4QiaiEO0m1BJFeA==
Variable Description
List of Variables:	Superkingdom - Superkingdom Major groups in Chase et al. 2020 - Major groups in Chase et al. 2020 Lineage contains expansin genes after Chase et al. 2020 - Lineage contains expansin genes after Chase et al. 2020 Lineage contains expansin genes based on the ExED - Lineage contains expansin genes based on the ExED Number of sequences in the ExED - Number of sequences in the ExED Further information - Further information
Variables
Superkingdom
f2788 Location:	Variable Format: character Notes: UNF:6:+GsQgLckd2PhkIshqYum3Q==
Major groups in Chase et al. 2020
f2788 Location:	Variable Format: character Notes: UNF:6:FlgvhrC219PfxjKsJ3EtMw==
Lineage contains expansin genes after Chase et al. 2020
f2788 Location:	Variable Format: character Notes: UNF:6:49Af4sBgBbl7wr8hCWK35Q==
Lineage contains expansin genes based on the ExED
f2788 Location:	Variable Format: character Notes: UNF:6:9/ZtFoJ6QsA8sLQamlN5Ig==
Number of sequences in the ExED
f2788 Location:	Summary Statistics: Max. 9697.0; StDev 1460.3789069741727; Min. 0.0; Valid 90.0; Mean 273.7444444444444; Variable Format: numeric Notes: UNF:6:SFJ8t0Luxz7Va/3d5n9M3A==
Further information
f2788 Location:	Variable Format: character Notes: UNF:6:T2DMQLdNqKEC2WHy4mbJTw==