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Part 1: Document Description
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Citation |
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Title: |
The FLAME-accelerated signalling tool (FaST) for facile parallelisation of flexible agent-based models of cell signalling |
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Identification Number: |
doi:10.18419/darus-1327 |
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Distributor: |
DaRUS |
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Date of Distribution: |
2021-02-08 |
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Version: |
1 |
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Bibliographic Citation: |
Fullstone, Gavin, 2021, "The FLAME-accelerated signalling tool (FaST) for facile parallelisation of flexible agent-based models of cell signalling", https://doi.org/10.18419/darus-1327, DaRUS, V1 |
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Citation |
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Title: |
The FLAME-accelerated signalling tool (FaST) for facile parallelisation of flexible agent-based models of cell signalling |
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Identification Number: |
doi:10.18419/darus-1327 |
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Authoring Entity: |
Fullstone, Gavin (Universität Stuttgart) |
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Distributor: |
DaRUS |
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Access Authority: |
Fullstone, Gavin |
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Depositor: |
Fullstone, Gavin |
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Date of Deposit: |
2021-02-04 |
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Holdings Information: |
https://doi.org/10.18419/darus-1327 |
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Study Scope |
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Keywords: |
Medicine, Health and Life Sciences |
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Abstract: |
This folder contains the FaST software, as well as all the raw data and tools to replicate this study. Paper_Data.pzfx: All raw and processed data in the main figures MCell_Model.tar.gz: The MCell model used in Figure 5 FaST_Software.tar.gz: The FaST software tool. Scripts to replicate the findings of the study are enclosed in the /example folder. Documentation and a tutorial for building the simulations is included in the /doc folder Visualiser_Config.xml: A configuration file for visualising model simulations, for use with the FLAME Visualiser Software Iteration_Data.tar.gz: Contains an example of raw outputs from a single ApoptoCell simulation |
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Notes: |
This study used the following software to generate data: FLAME LIBMBOARD 0.3.1, FLAME Xparser 0.17.0, FLAME GPU 1.4, Visual Studio Community 2015, GCC 4.2.1, OpenMPI 2.0.2, NVIDIA CUDA 9.0, MATLAB 2016b, MCell 3.4, Cellblender 1.1. All data analysis and statistics were performed using Graphad Prism 6.0h. |
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Methodology and Processing |
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Sources Statement |
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Data Access |
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Other Study Description Materials |
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Related Publications |
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Citation |
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Title: |
The FLAME-accelerated signalling tool (FaST) for facile parallelisation of flexible agent-based models of cell signalling. npj Systems Biology and Applications (2020)6:10 |
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Identification Number: |
10.1038/s41540-020-0128-x |
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Bibliographic Citation: |
The FLAME-accelerated signalling tool (FaST) for facile parallelisation of flexible agent-based models of cell signalling. npj Systems Biology and Applications (2020)6:10 |
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Label: |
FaST_Software.tar.gz |
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Text: |
FaST Software |
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Notes: |
application/x-gzip |
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Label: |
Iteration_Data.tar.gz |
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Text: |
Example iteration data from model |
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Notes: |
application/x-gzip |
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Label: |
MCell_Model.tar.gz |
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Text: |
MCell model used as a comparison in manuscript |
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Notes: |
application/x-gzip |
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Label: |
Paper_Data.pzfx |
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Text: |
All processed data from manuscript |
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Notes: |
application/x-graphpad-prism-pzfx |
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Label: |
Visualiser_Config.xml |
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Text: |
Visualiser configurations file to be used with FLAME Visualiser Software |
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Notes: |
text/xml |