Simulation Scripts for Motile Bacteria in a Channel (ICPSR doi:10.18419/darus-1188)

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Part 1: Document Description
Part 2: Study Description
Part 5: Other Study-Related Materials
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Document Description

Citation

Title:

Simulation Scripts for Motile Bacteria in a Channel

Identification Number:

doi:10.18419/darus-1188

Distributor:

DaRUS

Date of Distribution:

2021-01-14

Version:

1

Bibliographic Citation:

Lee, Miru, 2021, "Simulation Scripts for Motile Bacteria in a Channel", https://doi.org/10.18419/darus-1188, DaRUS, V1

Study Description

Citation

Title:

Simulation Scripts for Motile Bacteria in a Channel

Identification Number:

doi:10.18419/darus-1188

Authoring Entity:

Lee, Miru (Universität Stuttgart)

Distributor:

DaRUS

Access Authority:

Lohrmann, Christoph

Access Authority:

Huber, Frank

Depositor:

Lohrmann, Christoph

Date of Deposit:

2021-01-12

Study Scope

Keywords:

Computer and Information Science, Physics

Abstract:

Simulation scripts to simulate bacteria in a channel. Motility patterns run and tumble or straight swimming are supported. Requires Espresso simulation package. (http://espressomd.org/) For more information, see README.MD

Methodology and Processing

Sources Statement

Data Access

Notes:

CC BY Waiver

Other Study Description Materials

Related Publications

Citation

Identification Number:

10.1039/D0SM01595D

Bibliographic Citation:

M. Lee et al "The influence of motility on bacterial accumulation in a microporous channel", Soft Matter (2021), 10.1039/D0SM01595D

Other Study-Related Materials

Label:

new_Class_Tumble_6.py

Notes:

text/x-python

Other Study-Related Materials

Label:

README.md

Notes:

text/markdown

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Label:

ver8_observables_no_walls.py

Notes:

text/x-python

Other Study-Related Materials

Label:

ver8_observables.py

Notes:

text/x-python