Query sequences for the update of the LccED (doi:10.18419/darus-559)

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Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Part 5: Other Study-Related Materials
Entire Codebook

Document Description

Citation

Title:

Query sequences for the update of the LccED

Identification Number:

doi:10.18419/darus-559

Distributor:

DaRUS

Date of Distribution:

2020-01-27

Version:

1

Bibliographic Citation:

Zeil, Catharina; Buchholz, Patrick C. F., 2020, "Query sequences for the update of the LccED", https://doi.org/10.18419/darus-559, DaRUS, V1, UNF:6:hIeqwMgxpY0QZZZ4FAMRvg== [fileUNF]

Study Description

Citation

Title:

Query sequences for the update of the LccED

Identification Number:

doi:10.18419/darus-559

Authoring Entity:

Zeil, Catharina (Universität Stuttgart)

Buchholz, Patrick C. F. (Universität Stuttgart)

Grant Number:

FKZ:01DG17027

Distributor:

DaRUS

Access Authority:

Pleiss, Jürgen

Depositor:

Buchholz, Patrick C. F.

Date of Deposit:

2020-01-17

Holdings Information:

https://doi.org/10.18419/darus-559

Study Scope

Keywords:

Medicine, Health and Life Sciences, Protein sequence, Amino acid sequence

Abstract:

Query sequences for the individual BLAST searches used to update the Laccase and Multicopper Oxidase Engineering Database (LccED, <a href="https://lcced.biocatnet.de/">https://lcced.biocatnet.de/</a>).

Methodology and Processing

Sources Statement

Data Access

Other Study Description Materials

Related Publications

Citation

Title:

Maike Gräff, Patrick C. F. Buchholz, Marilize Le Roes-Hill & Jürgen Pleiss (2020): Multicopper oxidases: Modular structure, sequence space and evolutionary relationships. (submitted)

Bibliographic Citation:

Maike Gräff, Patrick C. F. Buchholz, Marilize Le Roes-Hill & Jürgen Pleiss (2020): Multicopper oxidases: Modular structure, sequence space and evolutionary relationships. (submitted)

File Description--f1457

File: seeds_accession.tab

  • Number of cases: 1260

  • No. of variables per record: 1

  • Type of File: text/tab-separated-values

Notes:

UNF:6:hIeqwMgxpY0QZZZ4FAMRvg==

Variable Description

List of Variables:

Variables

SequenceID;NCBI

f1457 Location:

Variable Format: character

Notes: UNF:6:hIeqwMgxpY0QZZZ4FAMRvg==

Other Study-Related Materials

Label:

seeds.fasta

Text:

Protein sequences are given in FASTA format with one line per sequence. Headers correspond to sequence identifiers of the Laccase and Multicopper Oxidase Engineering Database.

Notes:

application/octet-stream