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Part 1: Document Description
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Citation |
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Title: |
EnzymeML Metadata Block Configuration for Dataverse |
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Identification Number: |
doi:10.18419/darus-2105 |
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Distributor: |
DaRUS |
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Date of Distribution: |
2021-08-05 |
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Version: |
1 |
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Bibliographic Citation: |
Range, Jan Peter; Iglezakis, Dorothea, 2021, "EnzymeML Metadata Block Configuration for Dataverse", https://doi.org/10.18419/darus-2105, DaRUS, V1 |
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Citation |
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Title: |
EnzymeML Metadata Block Configuration for Dataverse |
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Identification Number: |
doi:10.18419/darus-2105 |
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Authoring Entity: |
Range, Jan Peter (Universität Stuttgart) |
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Iglezakis, Dorothea (Universität Stuttgart) |
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Distributor: |
DaRUS |
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Access Authority: |
Range, Jan Peter |
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Access Authority: |
FoKUS Team |
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Depositor: |
Range, Jan |
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Date of Deposit: |
2021-07-28 |
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Holdings Information: |
https://doi.org/10.18419/darus-2105 |
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Study Scope |
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Keywords: |
Computer and Information Science, Medicine, Health and Life Sciences, metadata, configuration, Dataverse, Biocatalysis, enzymatic reaction, Enzymes |
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Abstract: |
<p>This dataset contains a TSV-File for the configuration of a metadata block for data repositories basing on <a href="https://dataverse.org/" target=”_blank”>Dataverse</a>. The block helps to describe datasets with the concepts of the metadata scheme <a href="https://enzymeml.org/" target=”_blank”>EnzymeML</a>, which is a data model provided to facilitate the documentation and exchange of enzymological and biocatalytic research data. To add a metadata block to a Dataverse installation use the <a href="http://guides.dataverse.org/en/latest/admin/metadatacustomization.html#loading-tsv-files-into-dataverse" target=”_blank”>instructions in the Dataverse Admin Guide</a>. </p> <p> The EnzymeML.tsv file specifies the following elements: </p> <ul> <li> <b>Vessel</b> <ul> <li>Name</li> <li>Size</li> <li>Unit</li> <li>Constant</li> </ul> </li> <li> <b>Reactant</b> <ul> <li>Name</li> <li>Vessel</li> <li>Initial Concentration</li> <li>Substance Units</li> <li>Constant</li> <li>InChI</li> <li>SMILES</li> <li>SBO Term</li> </ul> </li> <li> <b>Protein</b> <ul> <li>Name</li> <li>Vessel</li> <li>Initial Concentration</li> <li>Substance Units</li> <li>Constant</li> <li>Sequence</li> <li>Organism</li> <li>UniProtID</li> <li>EC Number</li> <li>SBO Term</li> </ul> </li> <li> <b>Reaction</b> <ul> <li>Name</li> <li>Temperature Value</li> <li>Temperature Unit</li> <li>pH Value</li> <li>Educts</li> <li>Products</li> <li>Modifiers</li> <li>Reaction Equation</li> </ul> </li> <li> <b>Kinetic Law</b> <ul> <li>Name</li> <li>Reaction Reference</li> <li>Equation</li> </ul> </li> <li> <b>Kinetic Parameter</b> <ul> <li>Name</li> <li>Value</li> <li>Unit</li> <li>SBO Term</li> </ul> </li> </ul> |
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Kind of Data: |
Configuration File |
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Methodology and Processing |
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Sources Statement |
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Data Access |
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Other Study Description Materials |
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Related Materials |
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Structure of EnzymeML documents. Specification. <a href="https://enzymeml.org/downloads/files/specifications.pdf">https://enzymeml.org/downloads/files/specifications.pdf</a> |
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Label: |
EnzymeML.tsv |
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Notes: |
text/tsv |