Conserved positions in expansin homologuesdoi:10.18419/darus-735DaRUS2020-04-091Lohoff, Caroline, 2020, "Conserved positions in expansin homologues", https://doi.org/10.18419/darus-735, DaRUS, V1, UNF:6:HemykMznkJ0tyrf89mswkg== [fileUNF]Conserved positions in expansin homologuesdoi:10.18419/darus-735Lohoff, CarolineDaRUSPleiss, JürgenBuchholz, Patrick C. F.2020-03-10Medicine, Health and Life Sciencesconservation analysisConserved positions in the N- and C-terminal expansin domains of different groups from the Expansin Engineering Database (occurring in at least 70% of the annotated sequence entries). The expansin domains were annotated using hmmscan (from the HMMER software suite) against all sequence entries in the Expansin Engineering Database.Expansin Engineering Database (<a href="https://exed.biocatnet.de/">https://exed.biocatnet.de/</a>)<br> PDB (<a href="https://doi.org/10.2210/pdb4FER/pdb">doi: 10.2210/pdb4FER/pdb</a>)<br> Georgelis N, Tabuchi A, Nikolaidis N, Cosgrove DJ. Structure-function analysis of the bacterial expansin EXLX1. J Biol Chem. 2011;286:16814-16823. <a href="https://doi.org/10.1074/jbc.M111.225037">doi:10.1074/jbc.M111.225037</a><br> Yennawar NH, Li AC, Dudzinski DM, Tabuchi A, Cosgrove DJ. Crystal structure and activities of EXPB1 (Zea m 1), a β-expansin and group-1 pollen allergen from maize. Proc Natl Acad Sci U S A. 2006;103:14664-14671. <a href="https://doi.org/10.1073/pnas.0605979103">doi:10.1073/pnas.0605979103</a>Lohoff, Caroline, 2020, "Profile hidden Markov models of the ExED", <a href="https://doi.org/10.18419/darus-623">doi:10.18419/darus-623</a>, DaRUSLohoff C., Buchholz P. C. F., Le Roes-Hill M. & Pleiss J. (2020). The Expansin Engineering Database: a navigation and classification tool for expansins and homologues. Proteins: Structure, Function, and Bioinformatics 89:2.10.1002/prot.26001Lohoff C., Buchholz P. C. F., Le Roes-Hill M. & Pleiss J. (2020). The Expansin Engineering Database: a navigation and classification tool for expansins and homologues. Proteins: Structure, Function, and Bioinformatics 89:2.Conserved_amino_acids_in_C-terminal_domain.tab858text/tab-separated-valuesUNF:6:CE90w0ai1+p+rVxLddj0OA==Conserved_amino_acids_in_N-terminal_domain.tab1238text/tab-separated-valuesUNF:6:ztPrC1aaxgvhz6A2pKE7oA==Standard Position186.00.0151.0.114.021.733304355465208151.542352941176585.0UNF:6:FiLhp1HoXjQcPJhMHeU33g==BacteriaUNF:6:H53KNu0oXii9+B23LypWTQ==FungiUNF:6:nQ9hI0zfA6j2J+X8F+rtHQ==EXPAUNF:6:c3gyMMJa/sr3rXKH4yS/XA==EXPBUNF:6:w1j4qfH3f1s2QEjmV9zX1g==EXLAUNF:6:VSiM3cY8pSER8yjbAj1njQ==EXLBUNF:6:qSup5mynUsx0U+vOksAtdg==FunctionUNF:6:1lceCvJEnlQ/8WCZJ65KTQ==Standard Position0.058.9617886178861627.5132412840608761.5105.0123.011.0.UNF:6:2d+fOWxIK+1op4PNWxTExw==BacteriaUNF:6:ohsZmXjl8LdREENAlUhAgA==FungiUNF:6:15utZQYFN2zx2TIlVbmF7w==EXPAUNF:6:OteMKkYuXrxPynmgs5UomA==EXPBUNF:6:8sDN2/dYTyh/XIFYVX8FJw==EXLAUNF:6:XWNQgJmggT9fKteFkdRTKw==EXLBUNF:6:luP+tC2dJyfEerMUC+3qxQ==Function and motifUNF:6:Jh6IIsU713G1CIS9knvGig==