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Part 1: Document Description
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Citation |
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Title: |
Code for: Seasonal Dynamics of Gaseous CO2 Concentrations in a Karst Cave Correspond With Aqueous Concentrations in a Stagnant Water Column |
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Identification Number: |
doi:10.18419/darus-3276 |
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Distributor: |
DaRUS |
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Date of Distribution: |
2023-02-13 |
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Version: |
1 |
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Bibliographic Citation: |
Keim, Leon; Class, Holger; Schirmer, Larissa; Strauch, Bettina; Wendel, Kai; Zimmer, Martin, 2023, "Code for: Seasonal Dynamics of Gaseous CO2 Concentrations in a Karst Cave Correspond With Aqueous Concentrations in a Stagnant Water Column", https://doi.org/10.18419/darus-3276, DaRUS, V1 |
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Citation |
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Title: |
Code for: Seasonal Dynamics of Gaseous CO2 Concentrations in a Karst Cave Correspond With Aqueous Concentrations in a Stagnant Water Column |
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Identification Number: |
doi:10.18419/darus-3276 |
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Authoring Entity: |
Keim, Leon (Universität Stuttgart) |
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Class, Holger (Universität Stuttgart) |
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Schirmer, Larissa (Universität Stuttgart) |
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Strauch, Bettina (GFZ German Research Centre for Geosciences) |
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Wendel, Kai (Universität Stuttgart) |
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Zimmer, Martin (GFZ German Research Centre for Geosciences) |
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Grant Number: |
327154368 - SFB 1313 |
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Grant Number: |
EXC 2075 - 390740016 |
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Distributor: |
DaRUS |
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Access Authority: |
Keim, Leon |
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Depositor: |
Keim, Leon |
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Date of Deposit: |
2022-11-23 |
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Holdings Information: |
https://doi.org/10.18419/darus-3276 |
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Study Scope |
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Keywords: |
Computer and Information Science, Earth and Environmental Sciences, Engineering, Karst, DuMuX, Convective Mixing, CO2-Dissolution, CO2 |
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Abstract: |
This dataset contains the DuMux code for the simulations in <br> <a href="https://doi.org/10.3390/geosciences13020051">https://doi.org/10.3390/geosciences13020051</a> <br> For the detailed list of software used, please have a look at the file <b>install_class2023.sh</b>.<br> To run the simulations at your own computer, please conduct the following steps: <ol> <li> Install docker <a href="https://docs.docker.com/engine/install/ubuntu/">for example in ubuntu</a> .</li> <li> Make sure you can run docker <a href="https://docs.docker.com/engine/install/linux-postinstall/">without sudo</a>.</li> <li> build the docker image: <pre><samp>docker build -t class2023 --build-arg UID=$(id -u) --build-arg GID=$(id -g) . </samp></pre> This makes sure that your container has the right user and group id to avoid permission issues. </li> <li> Run the container.<pre><samp> ./docker_class2023.sh open </pre></samp></li> <li> To exit the container type: <pre><samp> exit</pre></samp></li> <li> To re enter the container type: <pre><samp> docker restart [container-id]</pre></samp> <pre><samp> docker exec -it [container-id] bash</pre></samp></li> </ol> When you are inside the running container you can run the following simulations: <ol> <li> Simulations of the real world scenario: <pre><samp>cd class2023a/build-cmake/appl/isothermal/column/ </pre></samp> Select the scenario by entering the folder (for example the normal case) <pre><samp> cd normal</pre></samp> Run the simulation <pre><samp>./../column_isothermal ./../params.input</pre></samp> For other scenarios enter a different directory and type either: <pre><samp>./../column_isothermal_pulses ./../params.input</pre></samp> <pre><samp>./../column_isothermal_superdiffusion ./../params.input</pre></samp> </li> <li>Grid studies: <pre><samp>cd class2023a/build-cmake/test/isothermal/columntop_constant/results/</pre></samp> or : <pre><samp>cd class2023a/build-cmake/test/isothermal/columntop_usedata/results/</pre></samp> Run the prepare simulation script: <pre><samp> python3 prepare_simulations.py </pre><samp> Go in the directory of interest and run the simulation: <pre><samp>./../../columntop_constant params.input </pre></samp> Or: <pre><samp>./../../columntop_usedata params.input </pre></samp> </li> <li> 2D and 3D comparison: First the 2D simulation: <pre><samp>cd class2023a/build-cmake/test/isothermal/smallcolumn/results/ </pre></samp> Then run the simulation <pre><samp> ./../smallcolumn_isothermal ./../params.input </pre></samp> 3D simulation: <pre><samp>cd class2023a/build-cmake/test/isothermal/smallcolumn3D/results/ </pre></samp> Then run the simulation <pre><samp> ./../smallcolumn3D_isothermal ./../params.input </pre></samp> </li> </ol> All the results of the simulation will be available on your host-machine in the corresponding folder. |
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Methodology and Processing |
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Sources Statement |
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Data Access |
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Other Study Description Materials |
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Related Studies |
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Keim, Leon; Class, Holger; Schirmer, Larissa; Wendel, Kai; Strauch, Bettina; Zimmer, Martin, 2023, "Data for: Measurement Campaign of Gaseous CO2 Concentrations in a Karst Cave with Aqueous Concentrations in a Stagnant Water Column 2021-2022.", <a href="https://doi.org/10.18419/darus-3271">https://doi.org/10.18419/darus-3271</a> |
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Related Publications |
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Citation |
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Title: |
Class, H.; Keim, L.; Schirmer, L.; Strauch, B.; Wendel, K.; Zimmer, M. Seasonal Dynamics of Gaseous CO2 Concentrations in a Karst Cave Correspond with Aqueous Concentrations in a Stagnant Water Column. Geosciences 2023, 13, 51. |
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Identification Number: |
10.3390/geosciences13020051 |
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Bibliographic Citation: |
Class, H.; Keim, L.; Schirmer, L.; Strauch, B.; Wendel, K.; Zimmer, M. Seasonal Dynamics of Gaseous CO2 Concentrations in a Karst Cave Correspond with Aqueous Concentrations in a Stagnant Water Column. Geosciences 2023, 13, 51. |
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Label: |
darus_code.tar.xz |
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Notes: |
application/x-xz |